Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c08
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 416 YNNIVSLFQTLKPRQRAYVLTLTLKTFNQNIT 321
           YN+++ L Q     ++ Y  TL  +TF    T
Sbjct: 243 YNHVLKLHQVAHYGEKVYKCTLCHETFGSKKT 274


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 230 WFNSDLA*WWLKHVNVQVLALVHLGRIKM 144
           W   DL   W +   VQV+  +HL R  +
Sbjct: 183 WTTDDLVFLWKEGDPVQVVKNLHLPRFTL 211


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 230 WFNSDLA*WWLKHVNVQVLALVHLGRIKM 144
           W   DL   W +   VQV+  +HL R  +
Sbjct: 183 WTTDDLVFLWKEGDPVQVVKNLHLPRFTL 211


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 407 IVSLFQTLKPRQRAYVL 357
           +V LF+T K R+  Y+L
Sbjct: 428 VVKLFKTFKDRKYLYML 444


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 413 NNIVSLFQTLKPRQRAY 363
           N + SLF TL  R R Y
Sbjct: 450 NAMYSLFDTLTERNRVY 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,906
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)