Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c05
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   6.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.8  

>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 STRTSNSFEVLVNSEVMNDTMVSSLSPHTKPS 203
           S  T+ S    VNS++++D  V+  + HT  S
Sbjct: 346 SVTTTESQNKFVNSQILSDLQVAKQAVHTNQS 377


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 423 YINISTLIYYLSVVQYHNFFLLGIQKKCYSIRNSFCI 533
           +  I T++ +  V++  +F LL + +     +NSFC+
Sbjct: 492 FAKIQTILLF--VIEIISFILLAVFRPFVGFKNSFCV 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,685
Number of Sequences: 5004
Number of extensions: 44890
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)