Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c05
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical p...    28   4.6  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    28   6.1  

>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 310 VFARNNTRVINTRNYKHNLTAQKKILMFLFYPICYNELT 426
           +F R    V  T  Y+H   ++ ++ +FL + IC + LT
Sbjct: 269 LFCRRKDEVTKTSPYEHVRNSKLRLFLFLLFSICVHVLT 307


>U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical
           protein B0361.3 protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 264 ESLKYIGMSFITNAFEHFRT-MKALC 190
           +SLK +G  F+T A EHFRT + +LC
Sbjct: 223 KSLKEMGTVFVTKAAEHFRTHIGSLC 248


>Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical
           protein F36D3.13 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 426 INISTLIYYLSVVQYHNFFLLG-IQKKCYSIRNSF-CILYKYVPRDLASINNALHCGDC 596
           +   T+ + +++V Y   +++  +Q K   IR    CI  + +   L +INN+LHC  C
Sbjct: 266 VTFMTISFMIAMVPYSGLYIINFVQSKSNGIRFILRCI--EVIFSFLITINNSLHCVLC 322


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 487 WVYKKNVIQLEIVFVYYINMFPGIWHLLIMLSIVEIA 597
           W++K N+   EI F  Y NM+  I+   +M   +E+A
Sbjct: 281 WMHKTNLSVTEICFPEYQNMYGKIFGGFLMRKALELA 317


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 487 WVYKKNVIQLEIVFVYYINMFPGIWHLLIMLSIVEIA 597
           W++K N+   EI F  Y NM+  I+   +M   +E+A
Sbjct: 236 WMHKTNLSVTEICFPEYQNMYGKIFGGFLMRKALELA 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,500
Number of Sequences: 27780
Number of extensions: 239868
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)