Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14c04
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 244 8e-66
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 203 1e-53
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 167 1e-42
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 29 0.74
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 0.97
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 6.9
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 9.1
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 244 bits (597), Expect = 8e-66
Identities = 106/169 (62%), Positives = 145/169 (85%), Gaps = 1/169 (0%)
Frame = +3
Query: 129 NIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGE 308
+IK+F G+SHP++A+ + R+GL+LG+ ++SN+ET+V IGESVR EDV+I+Q+GCG
Sbjct: 5 SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64
Query: 309 INDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGAD 488
IND+LMEL IMINAC+ ASA R+TA++PCFPY+RQDKK+KSRAPITA+L+AN++ AG +
Sbjct: 65 INDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAPITARLVANMLQTAGCN 124
Query: 489 HVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEW-KSSVMVSP 632
H+IT+DLHASQIQGFFN+PVDNLYAEP++ ++I+ENI +V+VSP
Sbjct: 125 HIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENIDTTVNPTVIVSP 173
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 203 bits (496), Expect = 1e-53
Identities = 93/169 (55%), Positives = 127/169 (75%)
Frame = +3
Query: 123 MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 302
M + + G SHP++ I RLG+ + K+F+N ET+VEI ESVR +DV+I+QSG
Sbjct: 1 MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60
Query: 303 GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAG 482
+ND+LMEL I+I+ACK SA R+TAV+P FPYS+Q K K R ITA+++ANL++VAG
Sbjct: 61 STVNDSLMELLIIISACKGGSAKRITAVMPYFPYSKQSKMRKYRDAITARMVANLLTVAG 120
Query: 483 ADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVS 629
DH+IT+DLHASQ+QGFF PVDNLYAEP I +WI+ N+ +W+ +V+VS
Sbjct: 121 VDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRNVDDWEEAVVVS 169
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 167 bits (406), Expect = 1e-42
Identities = 93/194 (47%), Positives = 124/194 (63%), Gaps = 24/194 (12%)
Frame = +3
Query: 123 MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 302
M N+ VF SHP + ++I L L++GR KFSN ET+V I +SVRG DVYIV
Sbjct: 1 MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60
Query: 303 GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQ-DKK-EKSRAPI----------- 443
G++ND+LMEL IMI+ACK ASA +VTAV+P FPYSRQ D+K S AP+
Sbjct: 61 GQVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVVPCK 120
Query: 444 -----------TAKLLANLISVAGADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIK 590
+ L+A+L+ +GADH+IT+DLH Q QGFF+IPVDNL+ P + +I
Sbjct: 121 KQTGYHPWIAQSGTLVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLKHYIS 180
Query: 591 ENIPEWKSSVMVSP 632
NIP + ++V+VSP
Sbjct: 181 LNIPNYHNAVIVSP 194
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 28.7 bits (61), Expect = 0.74
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 396 FPYSRQDKKEK-SRAPITAKLLANLISVAGADHVITIDLHASQIQGFF----NIPVDNLY 560
F Y R ++EK + ITA+ ++ L +DHV +++ I G + I +DNL
Sbjct: 2 FVYKRDGRQEKVAFDKITAR-VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 561 AEPAITKWIK 590
AE A T K
Sbjct: 61 AETAATMTTK 70
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 390 PCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHA 515
PCF Y + K+ K I + + N S G V IDLH+
Sbjct: 93 PCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHS 134
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 459 QVAWP*SAPGFSLSCPVSSTGS 394
QV P +APG S+ PVSS+ S
Sbjct: 12 QVQPPLAAPGLSMFAPVSSSNS 33
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 122 NAEHKSVYWKLSSRHRENYRRKARS 196
NAE + ++WK S H N +RK S
Sbjct: 16 NAESQKIHWK-SDWHHYNLKRKVAS 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,319
Number of Sequences: 5004
Number of extensions: 50292
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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