Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14c04
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...   163   1e-40
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    85   2e-20
07_03_1542 + 27577257-27577559,27577653-27577730,27577900-275779...    27   9.4  
06_01_0088 + 698237-698251,698738-698770,699177-699280,699382-69...    27   9.4  
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088...    27   9.4  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score =  163 bits (396), Expect = 1e-40
 Identities = 76/171 (44%), Positives = 120/171 (70%)
 Frame = +3

Query: 120 RMPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSG 299
           R   +K+F+G+++  +A+ I + LG++LG+   K+F++ E  V++ ESVRG DV++VQ  
Sbjct: 86  RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145

Query: 300 CGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVA 479
           C  +N+NLMELF+MI+AC+ ASA  +T V+P F Y+R D+K + R  ITAKL ANL++ A
Sbjct: 146 CSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEA 205

Query: 480 GADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSP 632
           G+D VI  D+H++Q  G+F+IPVD+++ +P I  ++       K  V+VSP
Sbjct: 206 GSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSP 255


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 85.4 bits (202), Expect(2) = 2e-20
 Identities = 38/75 (50%), Positives = 55/75 (73%)
 Frame = +3

Query: 342 INACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVITIDLHASQ 521
           IN  + ASA  +TAV+P F Y+R D+K + R  I AKL+AN+I+ AGA+ V+  DLH+SQ
Sbjct: 124 INIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAGANRVLVCDLHSSQ 183

Query: 522 IQGFFNIPVDNLYAE 566
             G+F+IPVD++Y +
Sbjct: 184 AMGYFDIPVDHVYGQ 198



 Score = 31.1 bits (67), Expect(2) = 2e-20
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = +3

Query: 132 IKVFTGSSHPDIAKTIVARLGLNLGRATTKK 224
           +++F+G+++P +++ I + LGL LG+   K+
Sbjct: 98  LRIFSGTANPSLSQEIASYLGLELGKINIKR 128


>07_03_1542 +
           27577257-27577559,27577653-27577730,27577900-27577999,
           27578677-27578819,27579242-27579478
          Length = 286

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 154 ELPVNTFMFGILALGLLKCFSSLLISFTCFSSNCIYI 44
           E  V   +F    L LL    SL  S  CF + C+YI
Sbjct: 96  ETTVERVIFDFRFLALLAVAGSLAGSLLCFLNGCVYI 132


>06_01_0088 +
           698237-698251,698738-698770,699177-699280,699382-699457,
           699987-700070,700420-700926
          Length = 272

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 90  EEKHFNNPSARMPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGES 263
           E+K     SA M N  VFTG+S    A   VA+   ++G  T +K + ++ +   G S
Sbjct: 206 EQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAEDQHKGSGPS 263


>01_03_0246 -
           14207899-14208052,14208132-14208206,14208682-14208801,
           14208905-14208981,14209204-14209285,14209439-14209485,
           14209561-14209681,14210188-14210235,14210478-14210569,
           14211001-14211057,14211203-14211273,14211376-14211493,
           14211574-14211621
          Length = 369

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 244 LVSLLLNFLVVALPKFRPSLATIVFAMSG*ELPVNTFMFGILALGLL 104
           LVSLLL  ++ AL  +   ++  V A  G EL   TF+F ++   LL
Sbjct: 57  LVSLLLLLVLSALGVYMGWMSPTVIADRGIELLSATFIFSVIVTFLL 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,969
Number of Sequences: 37544
Number of extensions: 333361
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)