Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14c04
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical pr... 285 1e-77
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 285 1e-77
U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical pr... 283 6e-77
U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical pr... 272 1e-73
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 157 6e-39
U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical pr... 29 3.7
U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 27 8.4
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 27 8.4
>U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical
protein R151.2a protein.
Length = 377
Score = 285 bits (700), Expect = 1e-77
Identities = 132/171 (77%), Positives = 155/171 (90%)
Frame = +3
Query: 120 RMPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSG 299
RMPNIKVF+GSSHPD++ I RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS
Sbjct: 58 RMPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSA 117
Query: 300 CGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVA 479
GEINDNLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVA
Sbjct: 118 AGEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVA 177
Query: 480 GADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSP 632
GADH+IT+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSP
Sbjct: 178 GADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSP 228
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 285 bits (700), Expect = 1e-77
Identities = 132/171 (77%), Positives = 155/171 (90%)
Frame = +3
Query: 120 RMPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSG 299
RMPNIKVF+GSSHPD++ I RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS
Sbjct: 127 RMPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSA 186
Query: 300 CGEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVA 479
GEINDNLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVA
Sbjct: 187 AGEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVA 246
Query: 480 GADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSP 632
GADH+IT+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSP
Sbjct: 247 GADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSP 297
>U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical
protein R151.2b protein.
Length = 319
Score = 283 bits (695), Expect = 6e-77
Identities = 131/170 (77%), Positives = 154/170 (90%)
Frame = +3
Query: 123 MPNIKVFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGC 302
MPNIKVF+GSSHPD++ I RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS
Sbjct: 1 MPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAA 60
Query: 303 GEINDNLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAG 482
GEINDNLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVAG
Sbjct: 61 GEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAG 120
Query: 483 ADHVITIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSP 632
ADH+IT+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSP
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSP 170
>U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical
protein R151.2c protein.
Length = 318
Score = 272 bits (668), Expect = 1e-73
Identities = 126/165 (76%), Positives = 149/165 (90%)
Frame = +3
Query: 138 VFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEIND 317
VF+GSSHPD++ I RL L + +A+ KKFSNKETNVEIGESVRGEDVYI+QS GEIND
Sbjct: 5 VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 64
Query: 318 NLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVI 497
NLMEL IMINACKIAS+ RV AV+P FPY+RQDKK+KSRAPI+AKL+AN++SVAGADH+I
Sbjct: 65 NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 124
Query: 498 TIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVSP 632
T+DLHASQIQGFF+IPVDNLYAEPAI K+IKE+IP W++SV+VSP
Sbjct: 125 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSP 169
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 157 bits (381), Expect = 6e-39
Identities = 71/164 (43%), Positives = 117/164 (71%)
Frame = +3
Query: 138 VFTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEIGESVRGEDVYIVQSGCGEIND 317
+ TG+SHP++AK + RL + LG AT +N+ET+V+I +SVRG+ V+I+QSG +N+
Sbjct: 13 LLTGNSHPELAKMVSERLEIRLGEATVYNKTNRETSVDIKQSVRGKHVFILQSGSKNVNN 72
Query: 318 NLMELFIMINACKIASASRVTAVVPCFPYSRQDKKEKSRAPITAKLLANLISVAGADHVI 497
++MEL ++I ACK + + +T ++P PYS+Q + + R+ I KL+A +I AGA ++
Sbjct: 73 DVMELLVLIYACKTSMSKTITVIMPYLPYSKQCRMLR-RSSIAMKLVAEMICKAGASRLV 131
Query: 498 TIDLHASQIQGFFNIPVDNLYAEPAITKWIKENIPEWKSSVMVS 629
++DL+ +IQGFF+ PVDNL A P + IK NIP++K++++V+
Sbjct: 132 SLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVA 175
>U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical
protein F45E1.7a protein.
Length = 489
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 75 KEINKEEKHFNNPSARMPNIKVFTGSSHPDIAKT 176
++IN+ E + S +P++ V T SSH D+ K+
Sbjct: 324 RQINRSEDIPSTHSNTLPSVAVNTASSHEDVGKS 357
>U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical
protein F45E1.7b protein.
Length = 495
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 75 KEINKEEKHFNNPSARMPNIKVFTGSSHPDIAKT 176
++IN+ E + S +P++ V T SSH D+ K+
Sbjct: 330 RQINRSEDIPSTHSNTLPSVAVNTASSHEDVGKS 363
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 141 FTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEI 254
F S P+ A + RLGL L K NKE N+ I
Sbjct: 575 FANMSFPEAANLLFNRLGLLLLAIELKDEENKECNIAI 612
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 141 FTGSSHPDIAKTIVARLGLNLGRATTKKFSNKETNVEI 254
F S P+ A + RLGL L K NKE N+ I
Sbjct: 575 FANMSFPEAANLLFNRLGLLLLAIELKDEENKECNIAI 612
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,127
Number of Sequences: 27780
Number of extensions: 283286
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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