Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14c03
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0417 - 8915604-8916779,8916863-8917270 30 1.4
08_02_1182 + 24992256-24992708,24992942-24993238 30 1.9
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 29 3.3
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 29 3.3
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 28 5.7
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 27 9.9
03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788... 27 9.9
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 101 KQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVF 268
K + SG + QL +K L+ +++ ++EA N + + + +PKWK +
Sbjct: 194 KAKYPSGHSEGMQLMDKTWLMYNEEARVMYLEEAEHNFAFDHCWKAVWNQPKWKAY 249
>08_02_1182 + 24992256-24992708,24992942-24993238
Length = 249
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 365 TPKGVTIHYPQKKKKFSAFGT-KSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPTWRL 541
TP +++H + K+ T + PG KG V+P V R ++ W+L
Sbjct: 170 TPSHLSVHSSSQDKEVDGESTDEGNSGSPGSKRKGKRKKGIFVSPTKSVARVKRSDCWKL 229
Query: 542 DKI 550
K+
Sbjct: 230 FKV 232
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/101 (28%), Positives = 41/101 (40%)
Frame = +2
Query: 230 RYVITEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIHYPQKKKK 409
RY+I E P W+ + + T+ GCP G+S P G Q K
Sbjct: 330 RYLI-ENPYWQDTFPKYKPRVFHRTSDGSTSGCPFGSSCHFLHNF-PGGY-----QAAAK 382
Query: 410 FSAFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPT 532
++ G + PG+ GP APN T +VK K+ T
Sbjct: 383 MTSHGGTAVAAPPGRMPLGPGAPNGPPTSSVKTRMCNKYNT 423
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 15 HPNNQIYMQTLKMKVKK*SIQNDRKLNARNKELIQGAIKITNCKIKWVWSIV 170
HP+ +++ LK +K ++ ND L R K L G ++I+N W +V
Sbjct: 1341 HPSLLLFLHRLKC-IKFKNMMNDTLLVMRRKALGNGIVRISNGNDMMSWLVV 1391
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +2
Query: 98 KKQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFKKR 277
KKQ+ DK + L+NK N + + KKK +E L++L V +PK V
Sbjct: 15 KKQKVVE--DKTFGLKNKNKSKNVQKY-KKKEEEKAREKELNDLFKVAVSQPKVPVGVDP 71
Query: 278 EAVAIPAYTALKPLKGCPC 334
+++ + + KG C
Sbjct: 72 KSIVCEFFKVGQCQKGFKC 90
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 613 RHSKLTIRPRSNDWCSVGVIRNLIESPRREFSRSNH 506
RH ++ + S W S+ + N+ ++PRR NH
Sbjct: 296 RHGQVPDQAASASWSSLKRVTNVKQTPRRTIPSMNH 331
>03_02_0375 +
7880543-7880872,7881291-7881365,7881445-7881531,
7881619-7881723,7881806-7881876,7882552-7882840
Length = 318
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 86 KA*CKKQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKV 265
KA KK+ TDS ++ + Q K V +KK DE + + T K +
Sbjct: 120 KAKVKKEETDSDDERKPKAQKKSSAVTKTSKVKKIKDEDLEIDTKKIKKGAATRKGDAEK 179
Query: 266 FKKREAV 286
KK + V
Sbjct: 180 VKKEKKV 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,568
Number of Sequences: 37544
Number of extensions: 348736
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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