Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14c01
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 30 0.27
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 1.4
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 27 1.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 27 1.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.5
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 2.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 3.3
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 4.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.4
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch... 25 5.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 5.8
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 25 7.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 7.6
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 29.9 bits (64), Expect = 0.27
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 296 GDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFA--ETWNKSPKSPGENSSHSKRLAVK 469
G+RP D+FEE D+ + +V RR F E + + GE + SKR +
Sbjct: 151 GNRPLSDIDSFEEPGFGLDEGEELNDEVVRRMHFGGFEDSDAENEKEGEGAHKSKREVMS 210
Query: 470 KVIS 481
++I+
Sbjct: 211 EIIA 214
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 206 ELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSL 370
++++ P S+++FF + ST S + S+DN ++ + +W L
Sbjct: 521 QISTSSTPAHDNLSLNDFFEPREASTPSESSNSSIESEDNLDKAVLNKQSQWHDL 575
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 251 SNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQS 394
S FFR +S N + P + D E K PD+++ L + ++ +S
Sbjct: 34 STFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 272 LRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFA 400
L K N R S S D+F ++ QSLG+ RQSF+
Sbjct: 92 LEVNKKNNFYRRSSSTDDFGISHARSRKEIQSLGRPHTRQSFS 134
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -3
Query: 191 LQQELCLVSFGRYHCFWITYHFQAESLLGTTFPVFFSVLNFFTIQ 57
L + V+ GRY C W++ HF S++ +F+ +L F++++
Sbjct: 250 LSVSMLKVAPGRYECLWLSCHFY-YSIIYLLNSMFY-LLTFYSLR 292
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 185 AEGTDSLELTSYKNPKTWKKSISNFF-RNQLRSTKSNEGDRPSGSKDNFEEKEITPDQ 355
AE +++L ++S K KK N +NQ+ +S E + P G K+ E+ D+
Sbjct: 42 AEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELDDDE 99
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +2
Query: 230 KTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETW 409
K W +F NQL K++ D S S ++F P+ ++ L KV ++ + + +
Sbjct: 224 KEWTNREEKYFENQLHLVKASSSD-VSNSSNSF------PENRYPKLTKVEKQMTKSVSK 276
Query: 410 NKSPKSPGENSSHSKRLAVK 469
+N +K L +
Sbjct: 277 TSQTDKDEDNLDFTKNLLTR 296
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 3.3
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +2
Query: 230 KTWKKSISNFFRNQL--RS--TKSNEGDRPSGSKDNFEEKEITPDQKWQSLGK-VFRRQS 394
K + ++S FF + RS N D P K+ + + Q QS + +F+ S
Sbjct: 24 KLHRSTVSKFFEHPTSKRSIGVTENGNDSPEAFKNELDNRNNADSQSLQSSTESLFKADS 83
Query: 395 ---FAETWNKSPKSPGENSSHS 451
+ +K P+SP NS H+
Sbjct: 84 EDYLCKKVSKGPESPRVNSFHN 105
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 377 VFRRQSFAETWNKSPKSPGENSSHSKRLAVK 469
+F SF+ + ++P SPG N S+ AVK
Sbjct: 143 LFPGSSFSASSQQNPSSPGSNDIKSEFAAVK 173
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 4.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 300 IGLQAVKIILRKKRSLLTKSGNLW 371
+ + K+ILR +S++TK ++W
Sbjct: 1969 VNTEKTKLILRPDKSIITKENHVW 1992
>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 266 NQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAET 406
NQ+ +N G++PSGS K TP+ RR F ET
Sbjct: 8 NQVAGVANNGGEQPSGSNILRLPKLYTPNPLLTKEEVEVRRNEFWET 54
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 317 KDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPK 424
K+NF+ EI D W + ++ + F N PK
Sbjct: 355 KENFKNFEIPVDTFWSDIDYMYEYRDFTVESNAFPK 390
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 7.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 164 FGRYHCFWITY 132
FG Y CFW++Y
Sbjct: 155 FGSYGCFWLSY 165
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 344 TPDQKWQSLGKVFRRQSFAETWNKSPKSPGEN-SSHSKRLAVKKVISSYFGKSQKVTSAD 520
T ++ W ++ + S A TWN K+ G++ S +V+ V S G + S+
Sbjct: 406 TREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPTSDGTSVRSVCVSCCGNFGLIGSSK 465
Query: 521 G 523
G
Sbjct: 466 G 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,220
Number of Sequences: 5004
Number of extensions: 48169
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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