Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b23
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 386 TSSNTRYFHSSLKAAQVQKDGVTVLPSPQEVTTILRKNEFNKEFTTGSIKCYDSNQLASN 565
           T ++ +   S L A +V+KD   +L  P+E T  L         TTG++    +N  ++N
Sbjct: 683 TKNSKQGLFSKLFAKKVKKDKDIILNVPKESTQSLT--------TTGNVSYLTTNNTSNN 734

Query: 566 DPIEDTR 586
             ++  R
Sbjct: 735 SQLQIPR 741


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 371 LFWNTTSSNTRYFHSSLKAAQVQKDGVTVLPSPQEVTTILRKN 499
           +F    + N  YF+S    +      V    + +E  TI RKN
Sbjct: 131 IFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKN 173


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 342 NIVCFTSEFNLKYVLTVFKSKFSFELFIFKNGISPPL 232
           NI     E  +  V  V  + +  +  I +NG  PPL
Sbjct: 130 NISALCKELGISVVQKVSHTLYKLDEIIERNGDKPPL 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,347
Number of Sequences: 438
Number of extensions: 3356
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)