Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b22
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    27   2.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   5.5  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.3  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.6  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   9.6  

>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 358 STTLQHPRKAPCRAVTSWSVSMGSP*KEKPKLRSR 462
           STT  HP K P RA  S    + S  K  P + ++
Sbjct: 310 STTANHPEKTPSRAAASLLSILDSKEKNTPSITAK 344


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 499 FIVTSSLADCIIFATSTLVFPFTDCPLTPTSSSPLCR----VPSLDAGVLSNI 353
           F+  + LA+  +F T    F  + CP +   +S +CR    + SLD G  ++I
Sbjct: 67  FLTIAGLAESELFDTLNPAFRISSCPSSNAFASLMCRYERQLDSLDNGKTTDI 119


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 231 RTYTAPWCRATAGKSLDRNTVRFAATSITDELKHKIRFYPLQ 106
           RTY    C+ T  K++D ++     T +TD   +   F P+Q
Sbjct: 203 RTYFITSCKDTTAKAIDVDSFEVIKTYLTDTPLNTSSFTPVQ 244


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 407  LVTALQGAFLGCWSVVEYLYDVKAWTQWSSTTDADTY 297
            L + L  A   C S+   L D+  W +W++  D +TY
Sbjct: 1035 LDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTY 1071


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 372 ASKEGT-LQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNKLHAD 521
           A+  GT + SGD   G+   + KG   VE  K  QS       +Y++ H D
Sbjct: 58  ANDMGTDIGSGDPYAGMTSDTKKGFNSVESRKKEQSDVRGGDTSYSRRHDD 108


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 439 PFTDCP-LTPTSSSPLCRVPSLDAGVLSN 356
           PFT    L+P+S  PL ++P+LD  V S+
Sbjct: 178 PFTPSDRLSPSSLVPLLKLPALDHAVSSS 206


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 655 FATSVSLHSIALDNPRAS---AAPEDMFSTNLCFIFFMIISRLFPCLGSAWSLL*FIVTS 485
           F+  + L S+A    R S   AA   +    +  +F M    LF  + S+WS L F++T+
Sbjct: 260 FSIIMVLESLAKSQYRKSNVLAADRSLCEYIILTLFHM--EYLFSFVASSWSTLDFVITT 317

Query: 484 SLA 476
            L+
Sbjct: 318 CLS 320


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 159 QQNELYFDPRIYPLLH 206
           ++N++YFDP I  +LH
Sbjct: 830 EENQVYFDPLINSILH 845


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = -2

Query: 365 VVEYLYDVKAWTQWSSTTDADTYQVLFIFTQHDATRRHDHT 243
           +++ L+ V+A T+ S    + +YQ++  FT+ ++ R  + T
Sbjct: 437 ILQDLFTVRALTRHSKNNRSISYQIIGFFTRLNSIRPVEFT 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,119
Number of Sequences: 5004
Number of extensions: 64394
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)