Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14b22
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 40 0.002
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 30 1.4
06_02_0303 + 14022428-14022652,14023247-14024159,14024310-140247... 30 1.9
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024... 30 1.9
05_01_0025 - 171012-171263,171361-171450,171536-171592,171907-17... 29 3.3
01_01_0085 - 639959-640192,640290-640379,640465-640521,640826-64... 29 3.3
05_07_0165 + 28107093-28108457 29 4.3
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865... 28 5.7
12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762... 27 9.9
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125... 27 9.9
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 339 LYIVQIFDNTPASKEGTLQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDE-VTINYNKLH 515
L ++ + + PA G Q GDEL+ VNG V GK+ +V+ M+Q KD VTI +
Sbjct: 188 LMVLGLILDGPAHSAGVRQ-GDELLSVNGIDVMGKSAFDVSSMLQGPKDTFVTIKVKHGN 246
Query: 516 ADP 524
P
Sbjct: 247 CGP 249
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 339 LYIVQIFDNTPASKEGTLQSGDELVGVNGQSVKG 440
L ++ + PA + G L GDELV ++G+SV G
Sbjct: 216 LLVMDCIEGGPADRAG-LHGGDELVEIDGKSVSG 248
>06_02_0303 +
14022428-14022652,14023247-14024159,14024310-14024700,
14024949-14025206,14025284-14025394,14025486-14025564,
14025842-14026027
Length = 720
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 386 AFLGCWSVVEYLYDVKAWTQWSSTTDADTYQVLFIFTQHDATRRHDHTHSIFE-RTPRH 213
AFL W + E + +K W +W + A+ + F + +HT ++ E R P H
Sbjct: 490 AFLPTWELEEGPWQLKRWHEWMNYVIAEQMRETVGFLDPCLISKPNHTFTLDEKRVPAH 548
>05_06_0038 -
25100851-25101474,25101945-25102058,25102151-25102441,
25102552-25102860,25103458-25104186
Length = 688
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 598 APEDMFSTNLCFIFFMI--ISRLFPCLGSAW 512
AP F TN C FM+ I RL CLG W
Sbjct: 172 APPLQFLTNACVALFMVQSIDRLVLCLGCFW 202
>05_01_0025 -
171012-171263,171361-171450,171536-171592,171907-171939,
172050-172124,172219-172308,172421-172522,172725-172795,
173326-173479,173587-173663,174183-174219
Length = 345
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/42 (26%), Positives = 28/42 (66%)
Frame = +3
Query: 453 EVAKMIQSAKDEVTINYNKLHADPKQGKSLDIIMKKMKHRLV 578
E ++I+ +DEVT+ + L A + +S++++++ ++ +LV
Sbjct: 166 ETQEIIEGTRDEVTVIHGDLSAFQEDLQSVNLVVRSLESKLV 207
>01_01_0085 -
639959-640192,640290-640379,640465-640521,640826-640858,
640972-641046,641141-641230,641343-641444,641643-641713,
642243-642396,642497-642573,643077-643113
Length = 339
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/42 (26%), Positives = 28/42 (66%)
Frame = +3
Query: 453 EVAKMIQSAKDEVTINYNKLHADPKQGKSLDIIMKKMKHRLV 578
E ++I+ +DEVT+ + L A + +S++++++ ++ +LV
Sbjct: 166 ETQEIIEGTRDEVTVIHGDLSAFQEDLQSVNLVVRSLESKLV 207
>05_07_0165 + 28107093-28108457
Length = 454
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -3
Query: 445 VFPFTDCPLTPTSSS-----PLCRVPSLDAGVLSNIC 350
VFP ++PTSS+ P+CRV ++ ++NIC
Sbjct: 73 VFPVEPAAVSPTSSTRTATAPICRVNHMEGYRIANIC 109
>02_05_0361 +
28285994-28286063,28286341-28286393,28286528-28286588,
28286825-28287912
Length = 423
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 503 IVYCYFILGRLYHFRDLNFGFSFYGLPIDTDQLVTALQGAFLGCWS 366
I Y +LG + DL + + LP+ T L+ A Q AF +S
Sbjct: 163 ITLIYVVLGLIIAADDLMYSYGLLYLPVSTYSLICASQLAFNAVFS 208
>12_02_0196 -
15374814-15374997,15375304-15375547,15376035-15376237,
15377275-15377502,15377674-15377819,15378020-15378233,
15378410-15378543,15378986-15379135,15379892-15380155,
15380962-15381051
Length = 618
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 177 FDPRIYPLLHDTMARCTFEDRMGMI 251
F PR++P L D ++ +F D++G +
Sbjct: 6 FKPRVHPDLRDVFSKMSFFDKIGFL 30
>11_01_0150 +
1256029-1256137,1256206-1256247,1256345-1256455,
1256538-1256600,1256678-1256910,1256999-1257223,
1257319-1257411,1257493-1257591,1257840-1257956
Length = 363
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 375 SKEGTLQSGDELVGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNK 509
S GTLQ+G ++V G+ K K K EVAK+ ++ K +V N+
Sbjct: 101 SLNGTLQNGTKMVQHKGRG-KNKCK-EVAKLKENQKIKVEFYNNR 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,997
Number of Sequences: 37544
Number of extensions: 422133
Number of successful extensions: 1161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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