Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b22
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.64 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 411 VGVNGQSVKGKTKVEVAKMIQSAKDEVTINYNKLH---ADPKQGKSLDIIMKKMKHRLVE 581
           +G+       +T +E+ K I+ AK++V     K H    +P  G +L    +   +R++ 
Sbjct: 148 IGIGDTIADPQTYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILN 207

Query: 582 N 584
           +
Sbjct: 208 D 208


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 421 LTPTSSSPLCRVPSLD 374
           LTP SS+P+  VPS D
Sbjct: 435 LTPPSSNPVSPVPSPD 450


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  CKNMKTTFYLKRIKSYLMFEFVR 147
           CK++ +T  L R+K YL  ++ R
Sbjct: 28  CKDITSTSALYRLKLYLFCDYDR 50


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 VAKMIQSAKDEVTINYNKLH 515
           V  M+  +K+ VT+N  KLH
Sbjct: 507 VIVMMNFSKNPVTVNLTKLH 526


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 508 LL*FIVTSSLADCIIFATSTLVFPFTDCPLTP 413
           LL  IV +S+  C++  T+  +    +C  TP
Sbjct: 2   LLYHIVGASVLICLLNETAKAIIGVDECQATP 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,510
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)