Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b20
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    33   0.041
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    31   0.12 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    30   0.29 
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        28   1.2  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    28   1.5  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    28   1.5  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.0  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.5  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   3.5  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   3.5  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   3.5  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   3.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   8.1  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   8.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   8.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   8.1  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   8.1  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 156 AEKTPEQVIEEAKDVIKPESVEENERTDDVVEPSKQTTV-EENLPNLKPGPDGKVDWTPL 332
           +E TP+   E  +     ES+ +NE T +  +P     V EE LP   P P+  V   PL
Sbjct: 60  SENTPKNTFESTQTYENLESISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPL 119


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 417 KVLDPEVINE---SNIVDYNAKTSIMQAFGNIDKHQNKNTKRLKQKAKDIFRWKVEVEKA 587
           +V+ PE + E    N+    ++ S   A     K Q K  KRLK+ AK+  R K + EKA
Sbjct: 683 RVISPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKA 742

Query: 588 CKAITEEVELLEIERQRLKGASR 656
            KA  EE  L +   +  K  SR
Sbjct: 743 RKA--EEKRLQKERAKYAKQMSR 763


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +3

Query: 387 SLSEWRKHNEKVLDPEVINESNIVDYNAKTSIMQAFGNIDKHQNKNTKRLKQKAKDIFRW 566
           SLSE    NE+     +I +S  V      S +  F  +D+H    ++ L   A+  +R 
Sbjct: 420 SLSELYLTNEEKKMASIIKDSVNVQIKLIESKLSHFDYLDQHIRLKSQELDAFAQATYRE 479

Query: 567 KVEVEKACKAITEEVE 614
           K+ +++ C+   +++E
Sbjct: 480 KLYMKRECQNARKKIE 495


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 159 EKTPEQVIEEA--KDVIKPESVEENERTDD--VVEPSKQTTVEENL--PNLKPGPDGKVD 320
           E  PE+ +E+A   D     +V++++RT         K  T+   L  PN+KP    +  
Sbjct: 12  ENCPEEYVEQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAG 71

Query: 321 WTPL 332
           WTPL
Sbjct: 72  WTPL 75


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 513  QNKNTKRLKQKAKDIFRWKVEVEKACKAITEEVELLEIERQRLKGAS-RVLMLPESISKE 689
            QNK      +K K++ +   E  +   A  EE+E L+++   L+ AS  +  L +S ++ 
Sbjct: 924  QNKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNASLNMQSLKDSDNRT 983

Query: 690  CLDLRS 707
              DL S
Sbjct: 984  ISDLES 989


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 141 GAFKKAEKTPEQVIEEAKDVIKPES--VEENERTDDVVEPSKQTTVEENLPNLKPGPDG 311
           G  K A K    +  + +D++  ++  VE++E+T +  +   +T  EENL   KP  DG
Sbjct: 277 GNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTTEDADEEPET--EENLDEFKPA-DG 332


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 162 KTPEQVIEEAKDVIKPESVEENERTDDVVEPSKQTTVEENLPNLKPGPDGKVDW 323
           K  E V  E   V+K ++V  N    D+ E S Q      LP L+P     +DW
Sbjct: 187 KETESVSLEETGVLKNQTVSVNV---DLKEISSQARSNIALPTLRPQEKNLIDW 237


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 84  TPLTS-----FPDDDKCPKVCTDIGAFKKAEKTPEQVIEEAKDVIKPESVEENERTDDVV 248
           TPLTS     F +  K PK  + I A+K A+ TP+  ++          V E E   ++ 
Sbjct: 184 TPLTSEAISQFLEKPK-PKTASLIKAYKMAQSTPD--LDSLSVPSSESEVSEEESDQEMS 240

Query: 249 EPS 257
           EPS
Sbjct: 241 EPS 243


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 209 RFDNIFCFFYNLFGSFLRFFECPNICA 129
           R D  FC FY LF +F R F    I A
Sbjct: 103 RLDIAFCLFYALFFTFCREFIMQEIIA 129


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 258 KQTTVEENLPNLKPGPDGKVDWTPLGNMTGTRPGVNKYSISRYSLSEWRKHNE 416
           K    EE  P++      +V W+  GN+     G NK  + + S ++W+  NE
Sbjct: 246 KTPLTEEKFPDIA----WRVSWSLSGNILAVSCGDNKVYLFKESQNKWQLLNE 294


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +3

Query: 459 DYNAKTSIMQAFGNIDKHQNKNTKRLKQKAKDIFRWKVEVEKACKAITEEVELLEIERQR 638
           D NA    M     + KH  K+  R+   A+  F W   + K C+ + + V+L++  R  
Sbjct: 568 DSNAAKDTMD---KVKKHL-KSLLRVGDTARKEFTWPENMPKPCEVMQQVVQLMKYHRAV 623

Query: 639 LKGASRVLMLPE 674
           ++  + +++ PE
Sbjct: 624 MR-ENFIILGPE 634


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 159 EKTPEQVIEEAKDVIKPESVEENERTDDVVEPSKQTTVEENL 284
           E+T      E  +  KP   E     D++  PS+ ++ E N+
Sbjct: 325 EETKSVQANEENETEKPSQTESTTNNDNIKAPSESSSEESNI 366


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 644 F*SLSFYFKEFYFFCYRLTSFLYFDFPSKYILSFLFQSFGVFVLMFIDVSESL 486
           F S SF F  F FF  ++    +  FP  + L F F    VF+     +S  L
Sbjct: 126 FLSFSFSFS-FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLL 177


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 387 SLSEWRKHNEKVLDPEVINESNIVD 461
           S+  W ++ + VL P V+N S ++D
Sbjct: 280 SIVGWERNGKGVLGPRVVNLSTVLD 304


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 156 AEKTPEQVIEEAKDVIKPESV-EENERTDDVVEPSKQTTVEENLPNLKPGPDGKVDWTPL 332
           A K  +Q   E KD    ES    NE++++ VEP+K  T+  +    KP    K D TP 
Sbjct: 298 ASKETKQT-HETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPDKP---IKFD-TPE 352

Query: 333 GNMTGTRP 356
              T T P
Sbjct: 353 KKFTFTNP 360


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 288 NLKPGP-DGKVDWTPLGNMTGTRPGVNKYSISRYSLSEWRKHNEKVLDPE 434
           NL P   DG+++ T  G +  ++ G +KY ISRY  S  R  N     P+
Sbjct: 318 NLIPSRNDGRINRTSHG-LRYSQGGQSKYWISRYDQSRVRLINNSQNSPQ 366


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 28/108 (25%), Positives = 50/108 (46%)
 Frame = +3

Query: 378 SRYSLSEWRKHNEKVLDPEVINESNIVDYNAKTSIMQAFGNIDKHQNKNTKRLKQKAKDI 557
           S+Y L  ++K  E+   P + NE+N VD +A  S +   G      N     L Q    +
Sbjct: 99  SKYYLEGFKKDLEEEGSPLLFNENN-VD-SALLSRLSTTG------NNTFSYLLQSWSFL 150

Query: 558 FRWKVEVEKACKAITEEVELLEIERQRLKGASRVLMLPESISKECLDL 701
           +++K  + K      +   L  ++   +  A  V+MLP++ + E +DL
Sbjct: 151 YQYKKRLPKDENQDFKIHYLSLLKSLLVSYAGIVVMLPDTFNSETIDL 198


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 234 TDDVVEPSKQTTVEENLPNLKPGPDGKVDWTPLGNMTGTRPGVNKYSISR 383
           T ++  P+ QTTV+ N      G D  +     G      PG ++  +S+
Sbjct: 24  TTELSTPTSQTTVDVNDTKKSEGLDSTIILLTPGTSPNATPGSSELGLSK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,331
Number of Sequences: 5004
Number of extensions: 52441
Number of successful extensions: 244
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)