Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14b18
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 31 0.16
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.0
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 27 2.6
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 27 3.4
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 26 4.5
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 26 4.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 7.9
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 492 QSTVRQPNLQSLLSTNELSFELRKILISLIEAGARLAAAGR-NYESSLAQLCAALDQPKR 668
Q R +LQ + E RK +++ IE + AA R N SS+ + A + QPK
Sbjct: 93 QDQARLRDLQKIRQQKAEDAEQRKKILAEIERDKKRRAAERENKNSSVKETAAPIKQPKN 152
Query: 669 AQQTLIQVITP 701
A + TP
Sbjct: 153 ANSSSTCTRTP 163
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 149 SEQRDPSQG-HQSRRADVRGELPREHPYRRGEIESHR 256
S R SQ HQ D RGEL EH RR ++ R
Sbjct: 129 SASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLR 165
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 507 ASPCSVGSVMRP*LPL*CSVAAP*PPQDPTALPRPVSASQQALVPP 370
++P S+ P LP+ A P PP P A P P +PP
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/110 (22%), Positives = 45/110 (40%)
Frame = +3
Query: 315 DAKTLHEFLTLFQEEITTQEELMLVERRIPDAGALWDLGAVRAPQQSTIAAVTASLPTPQ 494
+ K +HE + I T + +L++ + G L + AP+Q +I +
Sbjct: 194 ELKRVHELVEKVDVVIDTVGDPLLMKSALNQLGIGGRLSYISAPKQGSIEFSYDMKQIYR 253
Query: 495 STVRQPNLQSLLSTNELSFELRKILISLIEAGARLAAAGRNYESSLAQLC 644
++ SLL + S L K +++ EAG + E+SL C
Sbjct: 254 KNLKIIGCNSLLLSLVESNSLLKNMVAKFEAGKYKVLNKKIAETSLTDEC 303
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 387 VERRIPDAGA-LWDLGAVRAPQQSTIAAVTASLPTPQSTVRQPNLQSLLSTNELSFELRK 563
VE+ I ++ LW + S + + L P V PN+ +++STN L E +
Sbjct: 554 VEQHICESSLILWMTAKDPTKRPSLLEVLNCGLLLPNQ-VSMPNISNIVSTNHLDVETQM 612
Query: 564 ILI 572
LI
Sbjct: 613 KLI 615
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 363 TTQEELMLVERRIPDAGALWDLGAVRAPQQSTIAAVTASLPTPQSTVRQPNLQSLL 530
T QE++ L+ + + D L + ++ AS+PTP + V NLQ L
Sbjct: 122 TPQEDVDLLMQTVADEAGL----EFNQNMNNNLSVPAASVPTPAAPVEDDNLQERL 173
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 340 RNSCRVFASSTRIILYRPKL 281
R++CR+ A + +I+L RPK+
Sbjct: 96 RHNCRILALNGKILLIRPKI 115
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 450 VAAP*PPQDPTALPRPVSASQQALVPP 370
++AP PP P ++P P SA PP
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 214 WKFATYVCPSGLMTLTRISLLRPVSGTSIARGSVSDL 104
W+F T++C TR+ L + VSG+ A + L
Sbjct: 611 WEFTTWLCKHDATEGTRVLLDKTVSGSISAEDVLEHL 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,696
Number of Sequences: 5004
Number of extensions: 55196
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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