Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14b18
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847 31 0.89
11_06_0134 + 20454405-20455121 31 1.2
09_05_0007 - 20036981-20037159,20037690-20037943,20038103-200383... 31 1.2
08_02_0826 - 21583507-21583555,21584000-21584679 30 2.0
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 30 2.0
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 29 2.7
02_05_0174 - 26486955-26487728 29 2.7
08_02_0894 + 22346027-22347925 29 3.6
10_05_0049 + 8548732-8549433 29 4.7
01_06_0754 + 31721356-31721783,31721914-31722004,31722276-317223... 29 4.7
10_07_0019 + 11931519-11932310 28 6.2
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 6.2
>06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847
Length = 410
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 387 VERRIP-DAGALWDLGAVRAPQQSTIAAVT 473
++RR+ D ALW+ R PQQ+ +AA+T
Sbjct: 64 LQRRLKIDGNALWNPAVFRTPQQNAVAAIT 93
>11_06_0134 + 20454405-20455121
Length = 238
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 347 FPRRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHG 475
F RR H +G A AD GRG + GG G AT SG G
Sbjct: 80 FCRRGHVSGDFPAKRRADRGRGGGCEAEGGDG-ATGWCSGEEG 121
>09_05_0007 -
20036981-20037159,20037690-20037943,20038103-20038355,
20038447-20038640,20039122-20039252,20039378-20039488,
20039834-20039932
Length = 406
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 444 PQQSTIAAVTASLPTPQSTVRQPNLQSLLSTNELSFELRKILISLIEAGARLAAAGRNYE 623
P + ++ V SL T + P L L +L +++ ++ S+++ AAG
Sbjct: 203 PHMAPLSIVMTSLSTATAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLN 262
Query: 624 SSLAQLCAALDQP 662
L +LC+A+ QP
Sbjct: 263 RYLPRLCSAI-QP 274
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 374 GTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHGLITDPTEHGEAT*P 517
G+ A EA + GS G GG GA + Y+GS + HG+ + P
Sbjct: 184 GSYAGSEAGSYAGSGAGPHGGSGAGSGSYAGSRAGSYAGSGHGKGSTP 231
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 453 SVAAP*PPQDPTALPRPVSASQQALVPPV**FLLGKASG 337
S + P PP P +P PV AS PP FLL ++G
Sbjct: 50 SSSPPPPPSPPHHVPLPVDASSAGPAPPSLAFLLTGSAG 88
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 125 RDAGTRYR-SEQRDPSQGHQSRRADVRGELPREHPYRRGEIESHRSFLSRWRNQFGPIQN 301
RD R R S RD H S R D R + RE R HRS SR R++ ++
Sbjct: 311 RDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREGSRHRRSSSRHRS-RSRSRSR-SRSRS 368
Query: 302 NSRTRRED 325
SR+R E+
Sbjct: 369 RSRSRNEE 376
>02_05_0174 - 26486955-26487728
Length = 257
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 432 AVRAPQQSTIAAVTASLPTPQSTVRQPNLQSLLSTNELSFELRKILISLIEAGARLAAAG 611
A+ + + + AV A PTP T R+ + + + L + L +++ A A AAAG
Sbjct: 9 ALSLAEAAPVTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTAVVAAAAAAAAAG 68
>08_02_0894 + 22346027-22347925
Length = 632
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 513 NLQSLLSTNELSFELRKILISLIEAGARLAAAGRNYESSLAQLCAALDQPKRAQQT 680
N SL+S +++ L ++++S A ARLAA G SLA+ LD P+ QT
Sbjct: 382 NYSSLISDYKVT--LSELIVSRPSASARLAAEGNELAPSLAE----LDLPEPDNQT 431
>10_05_0049 + 8548732-8549433
Length = 233
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 353 RRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHGLITDPTEHG 502
RR +GG A GRG + GG GAA++ G HG
Sbjct: 122 RRERSSGGLRGKWRASRGRGGGCEAEGGGGAASQRTGKETGAAGGGRRHG 171
>01_06_0754 +
31721356-31721783,31721914-31722004,31722276-31722365,
31722952-31723078,31723237-31723280,31723749-31724009
Length = 346
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 371 GGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHGLITDPTEHGEAT*PTIIVIDKRTIL 550
GG++A +D G GS G + AA + G H E AT PT ++ D + +
Sbjct: 85 GGSSAP-GSDNG-GSDSDGGGDKHAAAQSDDGQHAAGEPTQEQAAATSPTELIRDPKRVK 142
Query: 551 RATKDPDIPHRSR 589
R + RSR
Sbjct: 143 RILANRQSAQRSR 155
>10_07_0019 + 11931519-11932310
Length = 263
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 347 FPRRNHYTGGTNAC*EADTGRGSAVGSWGGQGAATEHYSGSHG 475
F RR +G A AD GRG + GG G AT SG G
Sbjct: 122 FCRRGRVSGDFPAKRRADRGRGGGCEAEGGDG-ATGRCSGEEG 163
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 125 RDAGTRYRSEQRDPSQGHQSRRADVRGELPREHPYRRGEIESHRSFLSRWRNQFGPIQNN 304
RD GT+ +E D SR A + G +P E + IES + RW + G + N
Sbjct: 656 RDDGTKRSTEFPD------SRTAHIYGVVPAERDTYQPHIESSEWYSGRWSCKGGDWKRN 709
Query: 305 SRTRREDP 328
++ P
Sbjct: 710 DDFSQDKP 717
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,091,504
Number of Sequences: 37544
Number of extensions: 416074
Number of successful extensions: 1573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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