Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b18
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    29   3.2  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    29   3.2  
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical
           protein C09B9.3 protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 HPYRRGEIESHRSFLSRWRNQFGPIQNNSRTRREDPT*VPDAFPR 355
           H YR G   SH  + + W+       + SR R+ D   +P A+P+
Sbjct: 191 HQYRSGNFFSHSVYRATWKEVSDFETHLSRVRKVDWVPIPLAYPQ 235


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 547 DSSFVDNNDCRLGCLTVLCGVGNEAVTAAIVLCCGALT 434
           +++F+  N+C   CL   C +G+   +  I + C A++
Sbjct: 407 ENNFLSQNECEQSCLVNPCKIGSPYRSQGITVQCSAMS 444


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 547 DSSFVDNNDCRLGCLTVLCGVGNEAVTAAIVLCCGALT 434
           +++F+  N+C   CL   C +G+   +  I + C A++
Sbjct: 407 ENNFLSQNECEQSCLVNPCKIGSPYRSQGITVQCSAMS 444


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 279 TSLGRYKIIRVLDAKTLHEFLTLFQEEITTQEE 377
           +S GR KII     K +HEF   F   IT  E+
Sbjct: 165 SSTGRMKIINFRTGKVIHEFQRSFDSRITIIEQ 197


>Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical
           protein F36D3.2 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 132 LVPDTGLSNEILVKVISPEGQTYVANFQENTLIEEVKLKAIGHFYPDGE 278
           L P+T  SN +  ++I P  +        N +I+  K     HF+PD +
Sbjct: 116 LQPETDDSNRVQYQIIHPRTRGPAILIDVNAIIKRSKTILETHFFPDDD 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,449
Number of Sequences: 27780
Number of extensions: 319865
Number of successful extensions: 1037
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)