Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14b15
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 260 1e-70
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 251 6e-68
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 134 8e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 117 2e-27
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 30 0.35
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 5.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 9.9
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 260 bits (637), Expect = 1e-70
Identities = 113/175 (64%), Positives = 139/175 (79%)
Frame = +2
Query: 83 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 262
MRE ISIH GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 442
+VPR++++DLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 443 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 607
++R++AD C+GLQGFL+ LL+ERL+++Y KKSKL+F++YPAP
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAP 175
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 612 ISTAVVEPYNSILTTHTTL 668
+ST+VVEPYNS+LTTH TL
Sbjct: 177 VSTSVVEPYNSVLTTHATL 195
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 251 bits (615), Expect = 6e-68
Identities = 110/179 (61%), Positives = 139/179 (77%), Gaps = 4/179 (2%)
Frame = +2
Query: 83 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DSFNTFFSET 250
MRE IS+H GQAGVQIGNACWELYCLEHGI PDG + V + D F TFFSET
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 251 GAGKHVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 430
G GK VPR++++DLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 431 LVLDRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 607
VL+R+R++AD C+GLQGFL+ LL+ERL+++YGKKS L+F++YPAP
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 612 ISTAVVEPYNSILTTHTTL 668
+ST+VVEPYNS+LTTH TL
Sbjct: 181 VSTSVVEPYNSVLTTHATL 199
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 134 bits (325), Expect = 8e-33
Identities = 67/175 (38%), Positives = 95/175 (54%)
Frame = +2
Query: 83 MRECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 262
MRE + I AGQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58
Query: 263 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 442
+VPRAV +DLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 443 RVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 607
VR+ A+ C LQGF + LL+ ++ +Y + F++ PAP
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAP 173
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 117 bits (281), Expect = 2e-27
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
Frame = +2
Query: 86 RECISIHAGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKH 265
RE I++ AGQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 266 VPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 439
+PRA+ IDLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 440 DRVRKLADQCTGLQGFLIXXXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 601
D + + AD L+GF + L+ERL+ Y KK ++++P
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 561 STERRSIRSDAKPDPVPPPNEWKIRKP 481
S +RR ++++ PD V PP W +R P
Sbjct: 238 SDKRRFLKTNYSPDDVAPPPNWVLRYP 264
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 174 WMPCSRQYSSQHALPICTPAWPAWIDMHS 88
W P H +PI TPA+P+ H+
Sbjct: 286 WNPKLYPSDKAHRMPIITPAYPSMCATHN 314
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +3
Query: 513 APDQVLHHSLWNVSPSIMVRNPNLNSRYIRHHXISTAVVEPYNSILTT 656
A +L + +WNV+P+ + L + +H ++ +V P + T+
Sbjct: 560 ASQGILQYDMWNVNPTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTS 607
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 167 HVRDNTAPNTRCRFAHQPG 111
++R+ PN C + H+PG
Sbjct: 208 YLRNQQCPNPSCMYLHEPG 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,806
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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