Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14b13
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 0.75
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 0.75
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 1.3
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 26 3.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 4.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.0
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 24 9.3
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 24 9.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 9.3
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.3
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.9 bits (59), Expect = 0.75
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 264 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDN 365
CI RNLNY+ SC V + +E S+ D+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDS 664
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 0.75
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 376 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 275
LM + ++++ M +P +TL +DGLS F LG
Sbjct: 98 LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 273 FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 404
F N++ S CS+ NL+ + R ++ N+ R+G HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 260 REYHFPLDRFIVSEHQGQHGN 198
R Y +P D F+VS + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 277 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 366
R + TTI R A++ H G+TSTLS RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 276 PRNLNYDSPSSCSVTCGRNLNIEFRSI---VDNFLIRLG 383
PR+ + D PSS CG L F+SI ++ F++++G
Sbjct: 887 PRDPDADHPSSLYHICGYRLTKFFKSIFRPMNVFVLKVG 925
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 24.2 bits (50), Expect = 9.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 254 YHFPLDRFIVSEHQ 213
YHFP+ F+ S H+
Sbjct: 30 YHFPISTFLYSRHE 43
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 249 VVFSNCI-NFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVA 425
V + N + NFP ++ PS+ S++ +++EF+ + N + + +H + I+D+
Sbjct: 183 VQYMNSVQNFPTDIPV--PSNLSISNLDVVSVEFKRLKRNSIFLINSFHSKVITSIQDLE 240
Query: 426 D 428
D
Sbjct: 241 D 241
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 284 VSRKVYAIREYHFPLDRFIVSEHQGQHGNLEYQDAGRQ 171
++ +A+ E +P D+ I S G+ Y+D G Q
Sbjct: 838 IALDAFALHERGYPTDQSIRSLQIPDMGDFYYRDGGEQ 875
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 9.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 300 GYRSSSFSESLCN*RIPLSSGPFYCIGTSGAARQLGIPGRRPSAKRPS 157
G+ SSS S L+S P G+ A Q P RP+++RP+
Sbjct: 36 GHPSSSSSTLPNYAASSLNSRPVSSSGSGNAYSQAPYPPARPTSQRPN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,034
Number of Sequences: 5004
Number of extensions: 28470
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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