Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b13
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0149 - 22733703-22736216                                         28   3.9  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   3.9  
05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922     27   5.2  
04_01_0099 + 1029785-1030039,1030269-1030357,1030484-1030541,103...    27   5.2  
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    27   6.9  
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925...    27   9.1  
01_06_0138 + 26865895-26865953,26866628-26867870                       27   9.1  

>05_05_0149 - 22733703-22736216
          Length = 837

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 415 LISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQLDG 299
           L + F S+C I   + K++T++++  + F P    +L G
Sbjct: 699 LENRFSSLCGIQEEISKIATLDKSDEVHFTPFQAAKLQG 737


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 324 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKT 437
           G  L+  FR +VDNFL+R   W  +    +++  D+KT
Sbjct: 254 GIKLSPWFRLVVDNFLMRW--WDHVEQGTLEEAIDMKT 289


>05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922
          Length = 618

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 243 SGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQKPCCAG 124
           +G F+ I     A QLG+ G   SA  PSLR    P C G
Sbjct: 85  AGRFWTIAAGSVAYQLGMVGLTVSALVPSLR---PPPCRG 121


>04_01_0099 +
           1029785-1030039,1030269-1030357,1030484-1030541,
           1030643-1030960,1031043-1031165,1031698-1031901,
           1031982-1032041
          Length = 368

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 433 LRSATSLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 308
           +R     +SEFGS+ ++P +MR+   +  N  LRF     LQ
Sbjct: 240 MRDMVQWVSEFGSMNRLPEVMRE--QMLANGQLRFRTKEQLQ 279


>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 324 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKT 437
           G  L+  FR +VDNFL  +G W  +    + +  D++T
Sbjct: 198 GLKLSPWFRLVVDNFL--MGWWDHVEKGTLNEAVDMET 233


>02_05_0752 +
           31491462-31491921,31492177-31492271,31492346-31492573,
           31493070-31493157,31493275-31493326,31493985-31494050,
           31494382-31494536,31494633-31494703,31494820-31495017,
           31495103-31495144,31496223-31496324,31496514-31496603,
           31496708-31496783,31497299-31497395,31497488-31497557,
           31497676-31497852,31498156-31498239,31498971-31499093,
           31500143-31500226,31500318-31500502,31500592-31500730,
           31500841-31500900,31500969-31501040,31501136-31501197,
           31501839-31501945,31501984-31502058,31502800-31503248
          Length = 1168

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 270 NFPRNLNYDSPSSCSVTCGR 329
           NFP  + YD+ ++CSV C R
Sbjct: 135 NFPYYVKYDARTTCSVLCLR 154


>01_06_0138 + 26865895-26865953,26866628-26867870
          Length = 433

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 300 PSSCSVTCGRNLNIEFRSIV 359
           P+ CS+TCGR LN+  + ++
Sbjct: 308 PAPCSLTCGRLLNLREKLVL 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,889,811
Number of Sequences: 37544
Number of extensions: 179504
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)