Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b13
         (448 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1...    29   5.5  
M92642-1|AAA58427.1| 1603|Homo sapiens alpha-1 type XVI collagen...    29   5.5  
AK092761-1|BAC03968.1|  315|Homo sapiens protein ( Homo sapiens ...    29   5.5  
AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collag...    29   5.5  
AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha...    29   9.5  
AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alp...    29   9.5  
AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alp...    29   9.5  
AB058773-1|BAB47499.1|  832|Homo sapiens KIAA1870 protein protein.     29   9.5  

>S57132-1|AAB25797.1| 1186|Homo sapiens type XVI collagen alpha 1
           chain protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 246 SSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQKP 136
           S G   C+G+ G     G+PG+R     P +RG+  P
Sbjct: 592 SEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGP 628


>M92642-1|AAA58427.1| 1603|Homo sapiens alpha-1 type XVI collagen
            protein.
          Length = 1603

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 246  SSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQKP 136
            S G   C+G+ G     G+PG+R     P +RG+  P
Sbjct: 1009 SEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGP 1045


>AK092761-1|BAC03968.1|  315|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35442 fis, clone SMINT2003128. ).
          Length = 315

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 255 IPLSSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQKPC 133
           +PL +    C  TS   +     GRR S  RPS RG   PC
Sbjct: 44  VPLPAHLLLCSSTSLWKKTTSPCGRRSSPCRPSWRGGAGPC 84


>AB209571-1|BAD92808.1| 1463|Homo sapiens alpha 1 type XVI collagen
           precursor variant protein.
          Length = 1463

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 246 SSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQKP 136
           S G   C+G+ G     G+PG+R     P +RG+  P
Sbjct: 884 SEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGP 920


>AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha 1
            chain precursor protein.
          Length = 1860

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 255  IPLSSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQ 142
            +P + GP    G SG   QLG PG+R +  R  L G Q
Sbjct: 1482 LPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQ 1519


>AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alpha 1
            protein.
          Length = 1860

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 255  IPLSSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQ 142
            +P + GP    G SG   QLG PG+R +  R  L G Q
Sbjct: 1482 LPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQ 1519


>AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alpha 1
            protein.
          Length = 1860

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 255  IPLSSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQ 142
            +P + GP    G SG   QLG PG+R +  R  L G Q
Sbjct: 1482 LPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQ 1519


>AB058773-1|BAB47499.1|  832|Homo sapiens KIAA1870 protein protein.
          Length = 832

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 255 IPLSSGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQ 142
           +P + GP    G SG   QLG PG+R +  R  L G Q
Sbjct: 454 LPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQ 491


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,120,531
Number of Sequences: 237096
Number of extensions: 951793
Number of successful extensions: 2996
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2992
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)