Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b11
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   9.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 397 EISYYSVSSKITLGIYP 447
           E+SY S+   I  G YP
Sbjct: 280 EVSYVSLDHPIPTGYYP 296


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 397 EISYYSVSSKITLGIYP 447
           E+SY S+   I  G YP
Sbjct: 280 EVSYVSLDHPIPTGYYP 296


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 74  IYWHSSRHFCRFLI 33
           +Y+H  RH   FLI
Sbjct: 205 VYFHLQRHMGNFLI 218


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 107 FTR*TIKKWFGIYWHSSRHFCRFLISANK 21
           FT  ++KK FG Y+       + LI  NK
Sbjct: 5   FTLQSLKKDFGTYFQQYCLHHKILIKKNK 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,097
Number of Sequences: 438
Number of extensions: 1987
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)