Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b06
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    26   5.2  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   9.1  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   9.1  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 491 GPKPSQMFHIPKATTIDKIGGIHCHICKLTFGKKKEYDEHYVGHNTG 631
           G   S  F +     I K  GI+  I K    K     EHYVG NTG
Sbjct: 161 GLSSSAAFCVASILAILKANGINT-ITKEDLVKISVVSEHYVGVNTG 206


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 316 KFIKLKLHDVRLKFVNSYAFSFI*SRPPISTISRLFSHYRRPLKPLCADVI 164
           K I   + DV L     Y F     +  + TI   + HY+  ++P C + I
Sbjct: 327 KIIIGSIADVTLPVQRMYYFIKAGGKLDVPTIHAFYQHYKEFVRPKCLEHI 377


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 262 AFSFI*SRPPISTISRLFSHY 200
           AFS + +R P+ T+S+L SHY
Sbjct: 376 AFSHV-ARLPMETVSQLLSHY 395


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 546 ILSIVVAFGMWNIWLGFGPAVL 481
           IL   + +G++ +W+G G A+L
Sbjct: 489 ILCFKLDWGLYGLWIGIGAAIL 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,500
Number of Sequences: 5004
Number of extensions: 59793
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)