Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14b01
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine re...    31   0.64 
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical...    29   3.4  
U51995-4|AAA96072.2|  317|Caenorhabditis elegans F-box a protein...    28   6.0  

>AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine
           receptor, class r protein5 protein.
          Length = 364

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 317 GSSSWTGQHEKTFEEICRSIVISYNKLVIYIHSFYSLRDTS 439
           G+  W G H+   +    SI++ YN   +   +F+SLR  S
Sbjct: 255 GTYMWFGFHDFPMDSSISSIILKYNIFAVLFITFFSLRPAS 295


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 389 NKLVIYIHSFYSLRDTSPFMYYTISISTL 475
           N+ +I IHSFY L  T  ++ Y+++++ L
Sbjct: 118 NQAMISIHSFYKLNPTGRYILYSLNLTEL 146


>Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical
           protein F54E4.2 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +1

Query: 229 LWEQQWH---PCAIVGSMTIMYLLICYMQ 306
           LW   WH   PC IV  ++ MYLL+   Q
Sbjct: 134 LWRSPWHMVIPCFIVAIISNMYLLVAVKQ 162


>AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical
           protein Y47D3A.15 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 276 NYVSSHLLYATSFMDLVLGQDNTRRHLKKFVEAL 377
           N+V  + +YA S  D V+   +T+R+ KKFV  L
Sbjct: 236 NHVMLNHMYALSIKDSVMVLSSTQRYRKKFVTTL 269


>U51995-4|AAA96072.2|  317|Caenorhabditis elegans F-box a protein
           protein 53 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 172 VKRTLEGWRVALLSLKSVILWEQQWHPCAIVGSM 273
           V+R L+ +++     ++V++W    H C IV S+
Sbjct: 107 VERALKDFKILSNHARNVVIWNMTEHGCGIVSSL 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,638
Number of Sequences: 27780
Number of extensions: 350231
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)