Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a23
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0008 + 8473198-8475523,8475618-8475967                           33   0.15 
07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870...    30   0.81 
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331     28   3.3  
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964...    28   4.3  
02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544     27   5.7  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    27   7.5  
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671...    27   10.0 

>04_02_0008 + 8473198-8475523,8475618-8475967
          Length = 891

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 154 KENTVDLKGDSGVPQITEIFIGDGCPTGYG-RAQDNTCQLII 276
           K N+V+LKG+ G+  +T IF    CPT    R ++NT  L+I
Sbjct: 500 KPNSVNLKGNKGLCALTSIFALPICPTSPAKRKKNNTRWLLI 541


>07_01_1123 -
           10385215-10385574,10385676-10385810,10386385-10387091,
           10387158-10387455
          Length = 499

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  LLLINVSGIKCFNVTSPSIEGVIFNGTF 132
           LLL N  G +C  + SP+I GV F+  +
Sbjct: 236 LLLRNSYGFRCLRINSPTIRGVAFHSPY 263


>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
          Length = 384

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  LLLINVSGIKCFNVTSPSIEGVIFNGTF 132
           LLL N  G +C  + SP+  GV F+  +
Sbjct: 220 LLLRNSYGFRCLRINSPTTRGVAFHSPY 247


>01_01_1198 -
           9643469-9643585,9643740-9643805,9643905-9644489,
           9645159-9645994,9646597-9646783,9647572-9647737,
           9648431-9648520,9649122-9649184,9649277-9649413,
           9649835-9650349,9651130-9651231,9651581-9651602
          Length = 961

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 204 GDIHRRWLPNWLWQ-SAR*HLSADNRV 281
           GD++RR L NW W+ ++  H SA + V
Sbjct: 842 GDVYRRHLENWTWRWTSHGHPSAPSAV 868


>02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544
          Length = 360

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 319 NVHSGNIKSNL-LVTRLSADRCYLALCHNQLGNHL 218
           N  SG+I +NL  +T+LS     L LCHNQL  H+
Sbjct: 160 NQLSGHIPNNLGNLTKLSL----LDLCHNQLSEHI 190


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 128 VPLNITPSIDGEVTLKHFIPDTLISNSTVTHNAYCRNIS 12
           +P +  P I  EV+ +H  PDT +    +       N+S
Sbjct: 434 IPTDSAPIISDEVSAQHSAPDTAVEPPAIEAGGVIGNVS 472


>06_01_0875 +
           6707483-6709394,6709750-6709829,6710077-6710174,
           6710704-6710840,6710961-6711301,6711402-6711599
          Length = 921

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 83  KHFIPDTLISNSTVTHNAYC 24
           K F+PDT ISN+ +T  + C
Sbjct: 395 KSFVPDTAISNALITMYSRC 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,824
Number of Sequences: 37544
Number of extensions: 206599
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)