Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a20
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239...    28   6.5  
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    28   6.5  

>12_01_0314 -
           2395113-2395760,2396151-2396738,2397218-2397252,
           2397546-2397632,2397913-2397985,2398648-2398714,
           2398795-2398931,2400196-2400217,2400733-2400807,
           2402281-2402365,2402605-2403334
          Length = 848

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 140 MSLTKHFRKIYHWVSEPVRVRTKKSRPAFFRETTQTRPS 24
           +SL   F  + HWV+EPV  R     P +F + T+ +PS
Sbjct: 560 VSLVLGFALVRHWVAEPVTAR----HPLYF-DYTEAQPS 593


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 394 LNSVKTYNVFICLTYLYTYNKTMNDITEILRQ 299
           +NS+K   ++IC+TY     K M   T+I+ Q
Sbjct: 504 INSIKDIFIYICITYEIYREKHMQIQTQIVHQ 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,137
Number of Sequences: 37544
Number of extensions: 201376
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)