Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a19
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81549-2|CAB04473.1|  167|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z70682-1|CAA94584.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    27   9.1  

>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 317 QTAITMTN*IPALFFLNIFSYVYLLLTRVNCFKCDIYYIIF 439
           + A+++    P  F     SY +L  + + C KC I+ ++F
Sbjct: 298 ENAVSLGIFCPLSFSFYFLSYAFLQTSLIACSKCSIFNLLF 338


>Z81549-2|CAB04473.1|  167|Caenorhabditis elegans Hypothetical
           protein F55C9.3 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +2

Query: 197 MSSASEIYATCSIITALDVEITDKQHVPRIN 289
           +S+  ++  T ++ T +DV+I+ K+H+P+ N
Sbjct: 21  LSNIKKLAETITVPTGIDVKISIKKHMPKKN 51


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 208 FRDLCDMFDYNCIRRRNYRQ-TACPEDKSMLTVSRRPTN 321
           FR  CD  DY   ++ N++  +A PE  + L+V  + T+
Sbjct: 396 FRASCDKIDYLSYQQNNWKSASALPEAPAFLSVKPKSTS 434


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 208 FRDLCDMFDYNCIRRRNYRQ-TACPEDKSMLTVSRRPTN 321
           FR  CD  DY   ++ N++  +A PE  + L+V  + T+
Sbjct: 532 FRASCDKIDYLSYQQNNWKSASALPEAPAFLSVKPKSTS 570


>Z70682-1|CAA94584.1|  363|Caenorhabditis elegans Hypothetical
           protein F08G5.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 373 ENVQEKQGRNLISHRNSCLLDDGRQLASIYPRDMLFVCNFY 251
           EN  +KQG  LI +  SC+L     + + +   ++F+C FY
Sbjct: 4   ENDNKKQGWTLIDNVISCILLVYAGIVTAFICPIVFLCFFY 44


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +2

Query: 260 TDKQHVP--RINRC*LSPVVQQTAITMTN*IPALFFLNIFS-----YVYLLLTRVNCFKC 418
           T+ QH P  RI +  LS      +IT    I A F +  ++      ++ + T V CF C
Sbjct: 382 TNPQHSPEKRIGKT-LSEAAVAISITSLTDI-ATFAMGCYTTLPGVQMFCMYTCVQCFFC 439

Query: 419 DIYYIIFL 442
            +Y IIFL
Sbjct: 440 YVYQIIFL 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,117,559
Number of Sequences: 27780
Number of extensions: 196270
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)