Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a13
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    29   0.48 
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    29   0.83 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   5.9  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   5.9  

>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
 Frame = +3

Query: 249 PKPKKVDVIVLNSKSVTLVYCLIITVGAL--------AFSIFQKEFIKIFTEKNLAVNNL 404
           P PK+ +  +    SV++V  LI  +G           +S+    F + F   +LAV  +
Sbjct: 180 PPPKRANYFLSICFSVSVVVSLIGLLGVWQKLLPKSNVYSVSSSSFARTFGFASLAVAEI 239

Query: 405 MIWIFHKVQSIFKNTARCCCIAVVECLIEIKNI 503
           +++I+    SIF+  A    +A++ C I  K++
Sbjct: 240 LLFIYWTSLSIFQFGAYAAGVAIM-CGIAAKSL 271


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 574 IDCLYSVVFCSYPELLILINVFRYIFLISIKH 479
           IDC Y V     P+L++ +   R++ L+ + H
Sbjct: 320 IDCQYPVAIQECPDLIMSLRFLRFLQLVKVTH 351


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 180 KPNLGIYQGVYFHSTSRLKNYTLPKPKKVDVIVLNSKSVTLVYCLIITVGALAFSIFQKE 359
           K +LG  + +  H     K YT P+  K ++ VL+ KSV      +      A S   +E
Sbjct: 130 KEDLGFIRDM--HRLLSYKGYTFPEIDKENLAVLSQKSVLKTAEELEKEDREAMSAKLQE 187

Query: 360 FIKIFTEKNLA-VNNLM 407
            I+  T  +LA  N LM
Sbjct: 188 LIRRGTPADLAEANKLM 204


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 534 SGYEQNTTEYRQ-SIKCKTIVDYVFLKKLKEFDEE 635
           S   +N   YRQ  +  KT++   F + + +FDEE
Sbjct: 2   SSVSKNARAYRQRKVGIKTVMPIYFERDIPDFDEE 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,791
Number of Sequences: 5004
Number of extensions: 50973
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)