Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a08
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0033 + 7574845-7575004,7575370-7575429,7575582-7575623,757...    29   3.4  
08_02_0298 - 15477119-15477724,15478105-15478333,15478368-154784...    28   5.9  
06_03_0050 + 15980215-15981519                                         28   5.9  

>11_02_0033 +
           7574845-7575004,7575370-7575429,7575582-7575623,
           7576192-7576363,7577881-7577991,7578042-7578132
          Length = 211

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 362 IDELLNESKEAIRQTNEFLEKWR 430
           +DEL+  +K+ +R T++ +EKWR
Sbjct: 189 VDELVVNTKKLVRATSKEIEKWR 211


>08_02_0298 -
           15477119-15477724,15478105-15478333,15478368-15478498,
           15478556-15478891
          Length = 433

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 257 CQPIAFFSPPLAMFSSRNKLSCRISFGTYQRNHCLTNNRPGINLKRRKC 111
           C  I   S  +A+ + ++K SC   F  + RNH LT     + L+  KC
Sbjct: 350 CLRIMKLSCQVAILAIQHKPSCAKDFNEHDRNHVLTKASENL-LELDKC 397


>06_03_0050 + 15980215-15981519
          Length = 434

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = +2

Query: 287 FIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQT--NEFLEKWRLRRIPTDFSY 460
           FI  ++LS   A++        +D     L + +  +R    + F E W     P D++ 
Sbjct: 11  FIVAVLLSSVAAWVAAATTLHERDAA--ALRDVRAGLRDLPGSRFFESWDDATDPCDYAG 68

Query: 461 LDEEPQEIKPLKLEVPILHM--AIIDTLGTTRSLP 559
           +  EP E  P  L V +L +   + D+ G   +LP
Sbjct: 69  VVCEPDEDDPAALRVSVLTLGTGLTDSPGLAGTLP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,571
Number of Sequences: 37544
Number of extensions: 285819
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)