Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14a06
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ298419-1|ABC33802.1| 230|Caenorhabditis elegans metaxin 2 pro... 84 1e-16
L14714-1|AAA28180.2| 244|Caenorhabditis elegans Temporarily ass... 83 1e-16
L14714-2|AAO12391.1| 55|Caenorhabditis elegans Temporarily ass... 50 2e-06
U29535-7|AAM81113.1| 275|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 28 5.4
U58758-2|AAB93428.1| 424|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 27 9.4
Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical pr... 27 9.4
>DQ298419-1|ABC33802.1| 230|Caenorhabditis elegans metaxin 2
protein.
Length = 230
Score = 83.8 bits (198), Expect = 1e-16
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Frame = +3
Query: 381 ITKLVQM-AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWNAEF 557
+T + M A + W D V L+ PY +Q L+ D A CLAVQ FL+M +LPF V R N +F
Sbjct: 11 VTDALSMNAAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQRPNVDF 69
Query: 558 MSPSGRVPFIKCGAFVVSELEPIVQFAANKGVTLCAQLS 674
+SP G VP +K +++ IV F KGVTL + LS
Sbjct: 70 ISPDGVVPLLKINKTLITGFNAIVDFVHKKGVTLTSHLS 108
>L14714-1|AAA28180.2| 244|Caenorhabditis elegans Temporarily
assigned gene nameprotein 354, isoform a protein.
Length = 244
Score = 83.4 bits (197), Expect = 1e-16
Identities = 42/91 (46%), Positives = 55/91 (60%)
Frame = +3
Query: 402 AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWNAEFMSPSGRVP 581
A + W D V L+ PY +Q L+ D A CLAVQ FL+M +LPF V R N +F+SP G VP
Sbjct: 3 AAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQRPNVDFISPDGVVP 61
Query: 582 FIKCGAFVVSELEPIVQFAANKGVTLCAQLS 674
+K +++ IV F KGVTL + LS
Sbjct: 62 LLKINKTLITGFNAIVDFVHKKGVTLTSHLS 92
>L14714-2|AAO12391.1| 55|Caenorhabditis elegans Temporarily
assigned gene nameprotein 354, isoform b protein.
Length = 55
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +3
Query: 402 AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWN 548
A + W D V L+ PY +Q L+ D A CLAVQ FL+M +LPF V R N
Sbjct: 3 AAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQRPN 50
>U29535-7|AAM81113.1| 275|Caenorhabditis elegans Hypothetical
protein C25H3.7b protein.
Length = 275
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 414 WPDNVK-LYQ---PYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWNAEFMSPSGRVP 581
W +NV LYQ P + L P CL ++ FL+ + EV W SP G +P
Sbjct: 35 WKENVVYLYQFPRPANRQPNLSP---YCLKIETFLRANRIKHEVVGTWLTLRQSPRGLLP 91
Query: 582 FIKCGAFVVSELEPIV 629
FI+ +S+ + IV
Sbjct: 92 FIELNGQQISDSQVIV 107
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 573 VPMET*-IQHSSASPLRMEDYTSSEMLVLPDSSHCQV 466
VP++T I H + SPL + +SS + P + HC+V
Sbjct: 13 VPLQTVMIGHPATSPLSLPSSSSSPTVADPSNIHCRV 49
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 573 VPMET*-IQHSSASPLRMEDYTSSEMLVLPDSSHCQV 466
VP++T I H + SPL + +SS + P + HC+V
Sbjct: 23 VPLQTVMIGHPATSPLSLPSSSSSPTVADPSNIHCRV 59
>U58758-2|AAB93428.1| 424|Caenorhabditis elegans Hypothetical
protein ZK1127.6 protein.
Length = 424
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 362 YVFIQNIDAESKFFIIEKIKRFLNLFCLL 276
+VF Q + FFI ++K +L LF LL
Sbjct: 14 HVFAQMVHISCDFFITSELKSYLKLFILL 42
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -2
Query: 407 LGHLDKFSNIVSDACYVFIQNIDAE------SKFFIIEKIKRFLNLFCLLSMV 267
+G L +++ CYVF+Q +D + S + ++ K+ RF LF LL ++
Sbjct: 51 IGTLPSKPHLLGVTCYVFLQKLDTKSVNFKLSNYSVMLKVARF--LFFLLQVI 101
>Z75955-8|CAB00122.1| 410|Caenorhabditis elegans Hypothetical
protein R07B7.13 protein.
Length = 410
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 48 NEISSKIMSDCNLLENDVDE 107
NE+S +++SD NL+EN +DE
Sbjct: 149 NEVS-RLISDLNLIENQIDE 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,722,299
Number of Sequences: 27780
Number of extensions: 302946
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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