Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a06
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 508 FRNACTARQLALSGNNICS 452
           FRN    ++L LSGN + S
Sbjct: 427 FRNCSDLKELDLSGNELTS 445


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 617 GAYRSVCREQRCHIVCSTFYG 679
           G+   +C  +  H VC  FYG
Sbjct: 111 GSLLHICMLELGHEVCGRFYG 131


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 613 SDTTKAPHLMKGTRPDGDMN 554
           SD     HLM    PD DMN
Sbjct: 179 SDLDNCNHLMTKFEPDLDMN 198


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 301 GFSICSVCLVWLTIL 257
           GF++ + C++WL  +
Sbjct: 709 GFTMYTTCIIWLAFV 723


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 301 GFSICSVCLVWLTIL 257
           GF++ + C++WL  +
Sbjct: 799 GFTMYTTCIIWLAFV 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,713
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)