Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14a04
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 202 3e-53
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 171 6e-44
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 48 2e-06
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 38 0.001
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 2.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.1
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 9.5
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 202 bits (494), Expect = 3e-53
Identities = 100/136 (73%), Positives = 110/136 (80%)
Frame = +1
Query: 235 RTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVGK 414
RTQKNKATEYHLGLLK KLAK R+QLLEP+ K G KGEGFDVLKSGDARVA IGFPSVGK
Sbjct: 16 RTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGDARVAFIGFPSVGK 75
Query: 415 XXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQVIA 594
ASYEFTTLT IPGV+EY GA IQ+LDLPGIIEGA+QG+G GRQ ++
Sbjct: 76 STLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEGASQGRG-GRQAVS 134
Query: 595 VARTADLVLMMLDATK 642
ARTADL+LM+LDATK
Sbjct: 135 AARTADLILMVLDATK 150
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 171 bits (417), Expect = 6e-44
Identities = 82/141 (58%), Positives = 101/141 (71%)
Frame = +1
Query: 232 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 411
A+TQKNKAT HLG+LKAKLAK + +L+ P+ GG G GFDV ++G V IGFPSVG
Sbjct: 16 AKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVARTGIGTVGFIGFPSVG 75
Query: 412 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQVI 591
K EAA+YEFTTLT +PGV++Y GA IQ+LDLPGIIEGA G+GRG+QVI
Sbjct: 76 KSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGIIEGAKDGRGRGKQVI 135
Query: 592 AVARTADLVLMMLDATKPYVH 654
VART +L+ ++LD KP H
Sbjct: 136 TVARTCNLIFIVLDVLKPMSH 156
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +1
Query: 382 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVI------EYRGANIQLLDLPG 543
+ L+G P+ GK + YEFTT+ G I ++ +L D+PG
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPG 298
Query: 544 IIEGAAQGKGRGRQVIAVARTADLVLMMLD 633
II+GA+ GKG G + A ++ +++D
Sbjct: 299 IIKGASDGKGLGYDFLRHVERAKMLCLVID 328
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +1
Query: 373 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 549
+ R L+ G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGIL 226
Query: 550 EGAAQGKG--RGRQVIAVARTADLVLMMLDATK 642
+ + + + A+A VL +D ++
Sbjct: 227 DHPLEQMNTIEMQSITAMAHLRSAVLYFMDLSE 259
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 508 RGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT 639
R IQLLD+ G+I GA GKG G + + R AD ++ ++D +
Sbjct: 75 RSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVS 118
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 195 PHDSASLSDNYLPRSQLIDNVFRL 124
PHDS+ LS NY P S L F +
Sbjct: 438 PHDSSMLSSNYRPPSALSPRNFNV 461
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 38 NYILDRH*IKFKNLYSFLV 94
N++L+ H ++F +LY F+V
Sbjct: 295 NFVLENHLVRFSSLYIFIV 313
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 434 RVDKRVDLPTEGK-PIKATRASPDFSTSKPSPLSPP 330
R+ LPT P+K + P + ++PSPLS P
Sbjct: 364 RMSSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSP 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,590
Number of Sequences: 5004
Number of extensions: 44818
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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