Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a02
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    36   0.004
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    31   0.19 
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    28   1.0  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.1  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.3  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +2

Query: 422 MLLSYMPSCLTGACK-HTKVKETIPNYAVESFKVEINNHM-WLEAVDICHMSISPQYYLS 595
           +LL YMP  +    + +T+ +++IPN +++ +  ++   + +L +  +CH  I PQ  L 
Sbjct: 99  LLLEYMPETVFDDMRWYTRRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLV 158

Query: 596 D 598
           D
Sbjct: 159 D 159


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 422 MLLSYMPSCLTGACK-HTKVKETIPNYAVESFKVEINNHM-WLEAVDICHMSISPQYYLS 595
           ++L +MP  +  A + +T+ K ++P   V+ +  ++   + ++ A  ICH  I PQ  L 
Sbjct: 106 LVLEFMPETIYRASRLYTRQKLSMPMLEVKLYIYQLLRSLAYIHASGICHRDIKPQNLLL 165

Query: 596 D 598
           D
Sbjct: 166 D 166


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 305 KRQKKNLSNEKASLMRRRENFVKACRRVSFQAYS 406
           K+  +NLS+ K +++ R + F K C  V    +S
Sbjct: 20  KKNSENLSSSKKTILARLQQFHKLCSEVGLNQHS 53


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 554 DICHMSISPQYYLSDDILKGLVL 622
           DI   S++P  Y  DD+ KGL+L
Sbjct: 495 DILSRSLAPSIYEMDDVKKGLLL 517


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 614 NP-LEYRLISNTGGIYSYDICPQL 546
           NP +EY+LI N  GI+    CP +
Sbjct: 327 NPDMEYKLIDNNQGIHRMQPCPNI 350


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +2

Query: 332  EKASLMRRRENFVKACRRVSFQAYSNYRKRMLLSYMPSCLTGACKHTKVKETIPNYAVES 511
            ++  L  R  N  ++   +SF+   NY K+ +   +  C TG     K +E   ++ +++
Sbjct: 2390 DQTKLFTRSSNITES---LSFKELCNYLKKKICYILAWCCTGD-TDAKSRERFTHWLMQN 2445

Query: 512  FKVEINNHMWLEAVDICHMSIS 577
              V++      E V I    +S
Sbjct: 2446 ASVDLPEIKDFEHVSILDFDVS 2467


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = -3

Query: 486 VSLTLVCLQAPVKQLGMYDKSIRLR*LEYAWKDTLLHAFTKFSRLLIREAFSLLRFFFCL 307
           +SL ++CL   +     + +   +  +  A    LLHA   FS   I  ++S+L    C 
Sbjct: 556 ISLCILCLLQFIVYSYFHREGFSVILMGLAAWPWLLHADYAFSHKTISVSWSVLTSLLCF 615

Query: 306 FGNLQ-NSRSTLLSCVLQAFIITSQEIHKIL 217
           F  L  N + +LL      F ++   +  IL
Sbjct: 616 FTILPVNKKESLLFIFAGGFAMSVAGVFYIL 646


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 320 NLSNEKASLMRRRE-NFVKACRRVSFQAYSNYRKRMLLSYMP 442
           N S++ ASL +    NF  + +RVS  A +   K + L Y+P
Sbjct: 256 NHSSDGASLPQSSFLNFNSSGKRVSVSAAAQQHKNLFLPYLP 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,716
Number of Sequences: 5004
Number of extensions: 51652
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)