Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a02
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714...    30   1.4  
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348     28   7.3  

>06_03_0397 +
           20370146-20370256,20371223-20371312,20371411-20371470,
           20371553-20371825,20371917-20371991,20372074-20372130,
           20372820-20372960,20373066-20373116,20373194-20373289,
           20373482-20373565,20375739-20375840,20376260-20376331
          Length = 403

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
 Frame = +2

Query: 311 QKKNLSNEKASLMRRRENF-VKACRRVSFQAYSNYRK--RMLLSYMPSCLTGACKHTK-V 478
           Q K   N +  +MR  ++  V + +   F   S       +++ ++P  L    KH K +
Sbjct: 104 QDKRYKNRELQIMRSMDHCNVISLKHCFFSTTSRDELFLNLVMEFVPESLYRVLKHYKDM 163

Query: 479 KETIPNYAVESFKVEINNHM-WLEAVD-ICHMSISPQYYLSDDI 604
           K+ +P   V+ +  +I   + ++  V  +CH  I PQ  L D +
Sbjct: 164 KQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDIKPQNILVDPL 207


>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
          Length = 662

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 569 SISPQYYLSDDILKGLVLIILNAHD 643
           S+S + + +DDI+KG +L++ +A D
Sbjct: 446 SLSLELFSTDDIMKGFILLLQSAED 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,600
Number of Sequences: 37544
Number of extensions: 278951
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)