Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14a02
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    37   0.014
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      37   0.014
AF016681-20|AAB66167.1|  370|Caenorhabditis elegans Hypothetical...    29   3.7  
Z48543-2|CAA88433.2|  478|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
 Frame = +2

Query: 311 QKKNLSNEKASLMRR--RENFVKACRRVSFQAYSNYRKR------MLLSYMPSCLTGACK 466
           Q K   N +  +MR+    N VK    + +  YS+  K+      ++L Y+P  +    +
Sbjct: 69  QDKRFKNRELQIMRKLNHPNIVK----LKYFFYSSGEKKDELYLNLILEYVPETVYRVAR 124

Query: 467 H-TKVKETIPNYAVESFKVEINNHM-WLEAVDICHMSISPQYYLSD 598
           H +K ++ IP   V+ +  ++   + ++ ++ ICH  I PQ  L D
Sbjct: 125 HYSKQRQQIPMIYVKLYMYQLLRSLAYIHSIGICHRDIKPQNLLID 170


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
 Frame = +2

Query: 311 QKKNLSNEKASLMRR--RENFVKACRRVSFQAYSNYRKR------MLLSYMPSCLTGACK 466
           Q K   N +  +MR+    N VK    + +  YS+  K+      ++L Y+P  +    +
Sbjct: 69  QDKRFKNRELQIMRKLNHPNIVK----LKYFFYSSGEKKDELYLNLILEYVPETVYRVAR 124

Query: 467 H-TKVKETIPNYAVESFKVEINNHM-WLEAVDICHMSISPQYYLSD 598
           H +K ++ IP   V+ +  ++   + ++ ++ ICH  I PQ  L D
Sbjct: 125 HYSKQRQQIPMIYVKLYMYQLLRSLAYIHSIGICHRDIKPQNLLID 170


>AF016681-20|AAB66167.1|  370|Caenorhabditis elegans Hypothetical
           protein F22E5.1 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 418 FAIIGICLEGHPPTRFYKIFSSPHKGSFFVTQVFFLSFWQFTEFTFNTIVLCTASF 251
           FA +   L  + PT    +   P+ GS       +++  Q+T  TF   VLC   +
Sbjct: 259 FATLNTALLDYFPTNSIGLLKDPNLGSQMGANTIYMARTQYTMETFKWWVLCALDY 314


>Z48543-2|CAA88433.2|  478|Caenorhabditis elegans Hypothetical
           protein C18D1.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 382 PTRFYKIFSSPHKGSFFVTQVFFL--SFWQFTEFTFNTIVLCTASFHNY 242
           P R YKI    H+  FF+  +  L  S  Q    T N  ++C ++ HN+
Sbjct: 4   PLRSYKI---RHRTRFFILFLCLLCLSISQSNTLTLNFTIICMSTLHNF 49


>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 NNNTSIK*KVLLIKNRKKLXKYFMNFLRGNYESLQYT 267
           NN+T+ K K++   N K    +F+NFLR     +Q T
Sbjct: 120 NNSTNCKMKIIF-NNFKHFPMFFINFLRKRSTPIQST 155


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 361 FSSPHKGSFFVTQVFFLSFWQFTEF 287
           F+S    +F    VFFL FWQF +F
Sbjct: 161 FNSAANLNFATILVFFLIFWQFFDF 185


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 284 REFCKLPKRQKKNLSNEKASLMRRRENFVKACRRVSFQAYSNYRKRMLLSYMP 442
           R FC L K+QKK  SNE     R    F    R    +    YR+ +  + +P
Sbjct: 30  RPFCFLHKQQKKKTSNETCK-YRENSTFTLNARSNFSKTLYKYRENVPKNSIP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,635
Number of Sequences: 27780
Number of extensions: 280102
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)