Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p24
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    73   4e-14
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    48   8e-07
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    29   0.49 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    28   0.86 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   3.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   8.0  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   8.0  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
 Frame = +3

Query: 162 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 341
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 342 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 518
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 519 GLDATARGKLLEKSE 563
           G     R KL+E S+
Sbjct: 116 GSSIEERAKLIEDSK 130


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 37/135 (27%), Positives = 68/135 (50%)
 Frame = +3

Query: 165 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 344
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 345 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 524
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115

Query: 525 DATARGKLLEKSEGI 569
               +G+ L  SE I
Sbjct: 116 PPELKGEALGNSEHI 130


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +3

Query: 117 QLFYRVTEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSW 272
           Q+F   ++  +E  +PLES PD L K +        K+G    W I V V    PE   W
Sbjct: 312 QMFCYFSQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECW 371

Query: 273 V 275
           +
Sbjct: 372 L 372


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 67  LRRYFFICHC-RCTGNLLSYFTE*LKWRPKL 156
           L++YFF C+C RC  +  +  T+  KW  +L
Sbjct: 242 LKKYFFSCYCPRCENDHTTKETDGSKWMGRL 272


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 170 FKRD*SFGRHFSHSVK*LSRLPVHRQ*QMKKYLRRFTIELKTYQIV 33
           F+R+ S  R+F++ V  + RL   R+ ++  YL + T  L  Y ++
Sbjct: 554 FEREKSTNRNFANYVHEVERLRESRKLELNGYLTKPTTRLARYPLL 599


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 380 FWKYFLYETKYQQCMWDYSS 439
           FW YF +      C WD S+
Sbjct: 237 FWAYFTFIASVLVCFWDESN 256


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 177 PDVLNKFLQKL-GVPNKW 227
           PDV NKFL+K+   P KW
Sbjct: 207 PDVANKFLEKVKTAPLKW 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,378
Number of Sequences: 5004
Number of extensions: 50368
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)