Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13p23
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 40 3e-04
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 2.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 3.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 3.3
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.7
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 9.9
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 25 9.9
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.9
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 504 RKSSRTKSRGPRICAICGYRAACQSAY--KDHMRSHSKIKLFECEICHKHLSGKYTLR 671
+ S +KS+G +C G AY K HM +H+ + F+C IC K + ++ R
Sbjct: 559 KAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKR 616
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 498 KPRKSSRTKSRGPRICAICGYRAACQSAYKDHMRSHSKIKLFECEICHKHLS 653
K ++ T R P C+IC A Q + H + H+ IK F C C++ +
Sbjct: 588 KSHMNTHTNYR-PFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFA 638
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 459 LDGDDHQYEDLQGKPRKSSRTKSRGPRICAICGY 560
LD D +D Q R++ + +R R C IC Y
Sbjct: 129 LDEADSMTQDAQAALRRTMESYARITRFCLICNY 162
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +3
Query: 483 EDLQGKP-RKSSRTKSRG-PRI-CAI--CGYRAACQSAYKDHMRSHSKIKLFECEICHK 644
E KP +K SR G PR C C + + H R+H +K F C C++
Sbjct: 5 ESFTEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNR 63
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 171 PGNINLFETHEDNVQYCKKIMHCANIHIAED 263
PG+I +F + ++YC K + + IH +ED
Sbjct: 236 PGDILVFLSGRKEIEYCIKKIEDSLIHASED 266
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 189 FETHEDNV----QYCKKIMHCANIHIAEDDGLPDFMCEECLVKLSVAFDFITKCQASDKA 356
FE +E+N+ QYC + + IH A+ +GL + E+ ++KL T ++
Sbjct: 160 FELNEENLDLLSQYCSEFL----IHAADVEGLCKGIDEDLVIKLGEWVKIPTTYAGGGRS 215
Query: 357 LRSVSLNYKPEKNDV 401
+ + L K K V
Sbjct: 216 IEDLDLVDKLSKGKV 230
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 250 WMFAQCIIFLQYCTLSSCVSNKLIFPG*TRHKRHI 146
WM C + Y T + +SNK++ G ++ ++H+
Sbjct: 236 WMHLICSYYGIYTTSTQILSNKIMTLGVSKKRKHL 270
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 552 CGYRAACQSAYKDHMRSHSKIKLFECE 632
CG + + S + H+R+HS + F C+
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCD 56
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 304 LTRHSSHMKSGRPSSSAMWMFAQCIIFLQYCTLSSCVSNKLI 179
LT HS +KSGRP ++A ++F + L + N +
Sbjct: 81 LTHHSKSLKSGRPFRLCA-LYAVQLVFSYFLMLVAMTYNAYV 121
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 507 KSSRTKSRGPRICAICGYRAACQSAYKDHMRSHSKIKLFECEICHKH 647
K + +++RG R C +C H +++ ++K+ CE C KH
Sbjct: 48 KEAFSENRGFRTCHVC------------HRKNNMRLKVGTCESCKKH 82
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 614 DFRMRSHMVFVGTLTGSPVTAYCTDS 537
+F MRS +++G G + +C DS
Sbjct: 51 NFGMRSKALYIGRSVGKWIETFCLDS 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,686
Number of Sequences: 5004
Number of extensions: 54721
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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