Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13p23
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0791 + 11222291-11224237 30 1.5
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 2.6
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 29 2.6
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 29 2.6
11_06_0412 - 23235670-23236512,23236804-23237838 29 3.4
03_04_0134 - 17593449-17594702 29 4.5
08_02_1246 - 25559601-25560026,25560031-25560576 28 5.9
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 28 5.9
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 28 5.9
09_01_0106 + 1673737-1674522,1674625-1675089 28 7.8
08_01_1026 - 10366534-10368021,10368505-10368525 28 7.8
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 7.8
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 28 7.8
02_01_0692 + 5179778-5181847 28 7.8
>03_02_0791 + 11222291-11224237
Length = 648
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Frame = -3
Query: 442 LISGSSLISMYSDLTSFFSGL*FKDTERKALSEAWHLVMKSKATESLTRHSSHMKSGRPS 263
+I G+SLI MY S L DT + + W+ V+ A L S M S S
Sbjct: 433 VILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES 492
Query: 262 SSAMWMFAQCII-FLQYCTLSSCVSNKLIFPG*TRHKRHILDSI 134
SS L C + V F +HK HI+ +I
Sbjct: 493 SSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNI 536
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 570 CQSAYKDH--MRSHSKIKLFECEICHKHLS 653
C + D + H K K F+C +CHK LS
Sbjct: 16 CDREFDDEKILVQHQKAKHFKCHVCHKKLS 45
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 534 PRICAICGYRAACQSAYKDHMRSH 605
PR C CG R CQ ++ HM H
Sbjct: 827 PRQCKTCGLRFKCQEEHRAHMDWH 850
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +1
Query: 205 IMCNIVRKLCIVRTSTSQRTTACLISCAKNA*-------LNFLLPSISSPNAKPLTKLYV 363
+ N++ K V T QR A ++ C K+A L + ++ NAK LTK V
Sbjct: 340 VALNMLMKAMEVDTQAVQRHRATILECVKDADVSIRKRALELVYLLVNDANAKSLTKELV 399
Query: 364 QYL*IINQ 387
YL + +Q
Sbjct: 400 DYLEVSDQ 407
>11_06_0412 - 23235670-23236512,23236804-23237838
Length = 625
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 352 LSEAW-HLVMKSKATESLTRHSSHMKSGRPSSSAMW-MFAQC 233
L+E W HL++ + + H+ ++KSG + +W +F+ C
Sbjct: 575 LAEVWAHLIVHIAPSSRIEAHAENLKSGSEFITVIWALFSHC 616
>03_04_0134 - 17593449-17594702
Length = 417
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 543 CAICGYRAACQSAYKDHMRSHS 608
C +CG AC + HMRSHS
Sbjct: 19 CKVCGKGFACGRSLGGHMRSHS 40
>08_02_1246 - 25559601-25560026,25560031-25560576
Length = 323
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 340 WHLVMKSKATESL-TRHSSHMKSGRPSSSAMWMFAQCIIFLQY 215
WH + K+ A+ S TR SS PS+ + A ++FL+Y
Sbjct: 177 WHFMNKAMASSSTSTRPSSCSSMAVPSTGRSGITAYTVLFLKY 219
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 505 ENHLEQRVGGQESVQYAVTGLPVRVPTKTI*DL 603
++ ++ RVGG+ES + V G RVP + I +L
Sbjct: 73 DSGIDHRVGGKESTELVVRGERKRVPNEFIDEL 105
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = +1
Query: 205 IMCNIVRKLCIVRTSTSQRTTACLISCAKNA*-------LNFLLPSISSPNAKPLTKLYV 363
+ N++ + V T QR ++ C K+A L + ++ N KPLTK V
Sbjct: 347 VALNMLMRAITVDTQAVQRHRTTILECVKDADASIRKRALELVFLLVNDTNVKPLTKELV 406
Query: 364 QYL 372
YL
Sbjct: 407 DYL 409
>09_01_0106 + 1673737-1674522,1674625-1675089
Length = 416
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 510 SSRTKSRGPRICAICGYRAACQSAYKDHMRSHS 608
S+R RGP C CG + A HM+SH+
Sbjct: 300 SARQSRRGPYECRKCGTMFSSGQALGWHMKSHN 332
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = +3
Query: 510 SSRTKSRGPRI----CAICGYRAACQSAYKDHM--RSHSK 611
S+ T S+ P+ CA+CG + + A +DH+ +SH K
Sbjct: 38 SAATSSKKPKAADLTCAVCGITSTGEKAMQDHLNGKSHKK 77
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 201 EDNVQYCKK-IMHCANIHIAEDDGLPD 278
+D V++C I H ++IH+ DDG+ D
Sbjct: 139 DDFVRFCGPYIEHASDIHVVRDDGVED 165
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 474 HQYEDLQGKPRKSSRTKSRGPR--ICAICGYRAACQSAYKDHMRS 602
H DL G +K R K G R +CA C A QS YK H+++
Sbjct: 109 HALGDLVGI-KKHFRRKHGGRRQWVCARCAKGYAVQSDYKAHLKT 152
>02_01_0692 + 5179778-5181847
Length = 689
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 261 PLRCGCSHNA*FSYNIAHYLRVFRTN*YFLV 169
P+ CGCS + +N +H +R YF++
Sbjct: 119 PVPCGCSPGGYYQHNASHTIRDTGVETYFII 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,249,992
Number of Sequences: 37544
Number of extensions: 316534
Number of successful extensions: 772
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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