Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p19
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   1.3  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   4.1  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   7.2  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   7.2  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   9.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    25   9.5  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 144 LKSALKKNLPCPWACELVPTNVPNAT-KAQTVLHPRKDVFVLKVAKIGPNGDRRCK 308
           LK  +  +  CPWA  L   N PN   +A  +   R+  FV KV       D  C+
Sbjct: 85  LKEHITHSPSCPWAYILSSKNNPNQNPQAAALTKCREQTFVDKVWPYTNRPDYHCE 140


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 81  FKNMFDKIGKKDAKSTQVNGNLKSALKKN 167
           F  M  KIG KD    ++ GN  +ALKK+
Sbjct: 423 FAQMAKKIGGKDGILGKLGGNPAAALKKD 451


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 216 ATKAQTVLHPRKDVFVLKVAKIGPNGDRRCKMELE 320
           A  A   L P++ +  L+  K G +G+R+ K+ELE
Sbjct: 266 AANAVKKLLPKQFLLDLEETKNGKSGNRKRKLELE 300


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 222 KAQTVLHPRKDVFVLKVAKIG 284
           K QT +HP KDV V+ VA  G
Sbjct: 185 KDQTKIHPPKDVDVILVAPKG 205


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 422 WFHAAARRWIRVTLRLPSI 366
           WFH    R I +T+ LPSI
Sbjct: 179 WFHRVLGRGIGLTILLPSI 197


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
 Frame = +3

Query: 84  KNMFDKIGKKD----AKSTQVNGNLKSALKK-----NLPCPWACELVPTNVPNATKAQT 233
           KN+F+K GK D    A+      +L S +K       LP     +  P  VPN  ++ T
Sbjct: 176 KNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSST 234


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 96  DKIGKKDAKSTQVNGNLKSALKKNLPCP 179
           +K+ KK AKS   N +LKS +KK    P
Sbjct: 45  EKVLKK-AKSVTTNNSLKSEIKKEKSVP 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,117
Number of Sequences: 5004
Number of extensions: 39010
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)