Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p19
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0804 - 7774631-7775152,7775985-7776083                           29   1.8  
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    27   9.5  

>08_01_0804 - 7774631-7775152,7775985-7776083
          Length = 206

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 327 LQAPTPFYTFCHHSVQSSLPLEQKHLFEDAKPSE 226
           + +P    T CHH    +L   +  +F D KPS+
Sbjct: 171 MPSPRTLLTVCHHKTPITLDWSRNPIFGDGKPSQ 204


>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +3

Query: 90  MFDKIGKKDAKSTQVNGNLKSALKKNLPCPWACELVPTNVPNATKAQTVLHP 245
           + D + K D K   ++GN        L     C+ VP  VP+ + +   + P
Sbjct: 403 LMDTLAKVDMKQNMLSGNPICTSPNQLNITQYCQSVPVIVPDGSASNATVCP 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,972,481
Number of Sequences: 37544
Number of extensions: 246266
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)