Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p16
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 317 LSGIASKPFTS*GLPVSLISLW 252
           + G++ KP +  G  + +I++W
Sbjct: 155 VKGLSGKPLSINGALIRIIAIW 176


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 35 SFNLYKIVNYIXIIC 79
          SFN++ ++ Y  I+C
Sbjct: 2  SFNIWWLILYFSIVC 16


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 317 LSGIASKPFTS*GLPVSLISLW 252
           + G++ KP +  G  + +I++W
Sbjct: 121 VKGLSGKPLSINGALIRIIAIW 142


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 145 TASIGLPGWGLWWCHNYFL 201
           +A + LPG  +W C  +F+
Sbjct: 365 SAVLELPGSSIWSCLFFFM 383


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 145 TASIGLPGWGLWWCHNYFL 201
           +A + LPG  +W C  +F+
Sbjct: 418 SAVLELPGSSIWSCLFFFM 436


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 317 LSGIASKPFTS*GLPVSLISLW 252
           + G++ KP +  G  + +I++W
Sbjct: 31  VKGLSGKPLSINGALIRIIAIW 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,408
Number of Sequences: 438
Number of extensions: 2359
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)