Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p15
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    31   0.23 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    29   0.54 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   5.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   6.6  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   8.7  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    25   8.7  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.7  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 399 GCIIYGLIADRFGRKIPIIINVISEITLGAVLMFCDSKLWSFL---FVFLKSLFASANIY 569
           G II G +AD FGRK P+I      I +G+++      LW  +   FV    +   A++ 
Sbjct: 143 GGIIAGALADFFGRK-PVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGV-GIASLI 200

Query: 570 LSLVTVCEIASNEWRSRLCFIVAM 641
           + L  + EIA ++ R RL  I  +
Sbjct: 201 IPLY-LSEIAPSKIRGRLVIIYVL 223


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = +3

Query: 399 GCIIYGLIADRFGRKIPI-------IINVISEIT-LGAVLMFCDSKLWSFLFVFLKSLFA 554
           GCII   IADRFG+++ I       II +I ++T + + +    +K+W+ + +   S+ A
Sbjct: 76  GCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQIMVAKIWTGIGIGALSVLA 135


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 399 GCIIYGLIADRFGRKIPIIINVISEITLGAVLMFCDSKLWSFLFVFLKSLFASANIYLSL 578
           G II+  +++  GRK PI+I ++        +          +  F    FASA + +  
Sbjct: 187 GPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGFFASAPLTVVA 246

Query: 579 VTVCEIASNEWR 614
             + ++ SN++R
Sbjct: 247 AALADMYSNKYR 258


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 225 NTLCSVTYFNNKTEILKCKEWQIKVMGFINLEKTWLIFC 341
           N  C VT   N+  +L   +   +V   I+ EKT L+FC
Sbjct: 112 NKFCVVTS-KNQVHLLSLSKGSWEVTNTISCEKTPLLFC 149


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 616 ERHSLLAISQTVTKLK*ILALANKDLRK 533
           E +SL  +SQ+   +K I  + NKD+RK
Sbjct: 145 EGNSLENVSQSAANIKQICNVRNKDIRK 172


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 616 ERHSLLAISQTVTKLK*ILALANKDLRK 533
           E +SL  +SQ+   +K I  + NKD+RK
Sbjct: 145 EGNSLENVSQSAANIKQICNVRNKDIRK 172


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 152 STRRHVPSSAA*CFVCN 202
           S++ HVPS+ A C +CN
Sbjct: 295 SSKLHVPSTEAICTICN 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,163
Number of Sequences: 5004
Number of extensions: 66315
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)