Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p15
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.0  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   5.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 486 AVLMFCDSKLWSFLFVFLKSLFASANIYLSLVTVCEIASNEW 611
           AVL    S +WS LF F+  L    + + ++      A +EW
Sbjct: 366 AVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEW 407


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 486 AVLMFCDSKLWSFLFVFLKSLFASANIYLSLVTVCEIASNEW 611
           AVL    S +WS LF F+  L    + + ++      A +EW
Sbjct: 419 AVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEW 460


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 402 CIIYGLIADRFGRKIPIIIN---VISEITLGAV 491
           CI +GL+A +FG +  +I++   +++EI +  V
Sbjct: 247 CITFGLVAGQFGAQGKLIVDFFMILNEIIMKLV 279


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 514 NFESQNISTAPSVISDITFMIIGIFLPNLS 425
           N E  NI  +P + +   FMI G+F  N S
Sbjct: 16  NDEIYNIIASPQLNNPTLFMIGGVFSNNKS 45


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 467 IRDYTWSGAYVLRFKIMVFLVCFSQIFI 550
           I D + SGA ++ + IM+FL   S +FI
Sbjct: 559 IVDSSTSGATIVNYSIMIFL---SAVFI 583


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 227 IVVHSYFICYTQSIRRLKKEHV 162
           I++ SYF+  T SI+   K HV
Sbjct: 15  ILITSYFVTPTMSIKCNCKRHV 36


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 322 FSRLIKPITLICHSLHFNISVLLLK*VTEHNVLL 221
           +SR++ P+  +C +L + I  L +  V   +++L
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 440


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 322 FSRLIKPITLICHSLHFNISVLLLK*VTEHNVLL 221
           +SR++ P+  +C +L + I  L +  V   +++L
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 440


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 252 NNKTEILKCKEWQIKVMGFINL 317
           +N+ +ILK  EW  K +G I++
Sbjct: 66  SNQNDILKVIEWVEKNLGAIDI 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,903
Number of Sequences: 438
Number of extensions: 4376
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)