Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p14
         (397 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q752U7 Cluster: AFR476Wp; n=1; Eremothecium gossypii|Re...    36   0.38 
UniRef50_UPI0000DB7C35 Cluster: PREDICTED: similar to partner of...    32   3.5  
UniRef50_Q2YB55 Cluster: NADH dehydrogenase; n=3; Bacteria|Rep: ...    31   6.1  
UniRef50_Q4UF43 Cluster: TatD-like deoxyribonuclease, putative; ...    31   6.1  
UniRef50_A1C6S4 Cluster: Putative uncharacterized protein; n=1; ...    31   6.1  
UniRef50_A6E6U0 Cluster: Signal Transduction Histidine Kinase; n...    31   8.1  
UniRef50_Q22CV8 Cluster: Putative uncharacterized protein; n=1; ...    31   8.1  
UniRef50_A0BZ69 Cluster: Chromosome undetermined scaffold_138, w...    31   8.1  
UniRef50_Q9P6L8 Cluster: Suppressor of RNA polymerase B srb8; n=...    31   8.1  

>UniRef50_Q752U7 Cluster: AFR476Wp; n=1; Eremothecium gossypii|Rep:
           AFR476Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 165

 Score = 35.5 bits (78), Expect = 0.38
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 146 GCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEY 244
           G F DT + CGK +      + +CD+ ++SC++
Sbjct: 45  GSFEDTAVACGKVLRVCEAAVSMCDMLQWSCKH 77


>UniRef50_UPI0000DB7C35 Cluster: PREDICTED: similar to partner of
           drosha CG1800-PA; n=2; Endopterygota|Rep: PREDICTED:
           similar to partner of drosha CG1800-PA - Apis mellifera
          Length = 627

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 309 GPNSLGFGQIPSSSLTCL--KTMLYSQEYSYKSQRSKNVRASLTDLPQTMI 163
           GP S+   ++P S++ CL  K  L+ +E   K Q+ ++  A +  LP   I
Sbjct: 204 GPGSVRKHEVPVSAIPCLQYKRALHEEEEERKKQKERDPNAEVCSLPSAKI 254


>UniRef50_Q2YB55 Cluster: NADH dehydrogenase; n=3; Bacteria|Rep:
           NADH dehydrogenase - Nitrosospira multiformis (strain
           ATCC 25196 / NCIMB 11849)
          Length = 630

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 397 FFFSGLMFYYLY--KLHCYTLSIYSLLLTHSRS*FLRVWTNSVIFFDVPENHAVFAGVF 227
           F+F  +   YL+     C+ +++YS    H    + R + N+++FF +  N  +F+G F
Sbjct: 84  FYFDKITAVYLFVGSFLCFLVTVYSRWYLHRERGYKRFF-NTILFFFIGYNIIIFSGNF 141


>UniRef50_Q4UF43 Cluster: TatD-like deoxyribonuclease, putative;
           n=3; Piroplasmida|Rep: TatD-like deoxyribonuclease,
           putative - Theileria annulata
          Length = 377

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 95  GDKAHLTELKKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEY 244
           G   H  +L  + E +     + II+    + E    LDLC+ Y+  C+Y
Sbjct: 66  GSLKHNPDLISVLERSKSVGMEKIIITAGCLEEVHEALDLCNTYDKECKY 115


>UniRef50_A1C6S4 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus clavatus|Rep: Putative uncharacterized
           protein - Aspergillus clavatus
          Length = 261

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 256 ENHAVFAGVFVQIAEVQKCTGFVNRFTTDY--DRVVKTTV 143
           EN+    G + ++A++     ++NRFT DY  DR   TT+
Sbjct: 124 ENYVNAQGKYGRLADLDNTAAYLNRFTIDYVADRAAATTI 163


>UniRef50_A6E6U0 Cluster: Signal Transduction Histidine Kinase; n=1;
           Pedobacter sp. BAL39|Rep: Signal Transduction Histidine
           Kinase - Pedobacter sp. BAL39
          Length = 818

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -1

Query: 238 AGVFVQIAEVQKCTGFVNRFTTDYDRVVKTTVRMLAYFFKFCQVSFISNYM-TIDIYE*K 62
           A  FVQ  E +K   ++++  +    ++ TT    AY FKF   S   NY+  I  ++  
Sbjct: 454 AAFFVQQKEYKKADYYLSKVLSAPREMISTTALASAYQFKFKTDSAAGNYLEAIKHFQAA 513

Query: 61  KQKMSFAYQHLTTNLSEQ 8
           K      + HL    +E+
Sbjct: 514 KGITDSVFNHLRLKQTEE 531


>UniRef50_Q22CV8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 603

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 181 FTTDY---DRVVKTTVRMLAYFFKFCQVSFISNYMTIDIY 71
           FTT+Y   +++++       Y FK C VSF  N+ TID+Y
Sbjct: 489 FTTNYCSTEQLLQGKEADSLYLFKECIVSFNLNFQTIDVY 528


>UniRef50_A0BZ69 Cluster: Chromosome undetermined scaffold_138,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_138,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 577

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 41  RERHFLFLLLIYVDCHIVGDKAHLTELKKICEH--AYGCFHDTIIVCGKSVNEARTFLDL 214
           +E+++L L  I   CH+  +K +L +LK  C+H   Y C         KSV   +  L  
Sbjct: 162 QEKYYLILTQIEKKCHLCKNKINLIDLK--CQHQMCYNCIQKQ-FEQSKSVQYIKCNLLG 218

Query: 215 CDLYEYSCEY 244
           C  Y Y   Y
Sbjct: 219 CTEYIYKSFY 228


>UniRef50_Q9P6L8 Cluster: Suppressor of RNA polymerase B srb8; n=1;
           Schizosaccharomyces pombe|Rep: Suppressor of RNA
           polymerase B srb8 - Schizosaccharomyces pombe (Fission
           yeast)
          Length = 1233

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -1

Query: 277 VIFFDVPENHAVFAGVFVQIAEVQKCTGFVNRF-TTDYDRVVKTTVRMLAYFFKFCQVSF 101
           ++ F VP   A++   F++ A V +   F+ +  TTD    VK    + A F     +SF
Sbjct: 168 LVKFRVPFTRAIW---FIRCAGVNEARSFLRKVQTTDITEWVKNWTDVAAGFL----ISF 220

Query: 100 ISNYMTIDIY 71
           IS+++  DIY
Sbjct: 221 ISSFLNADIY 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,478,111
Number of Sequences: 1657284
Number of extensions: 7167039
Number of successful extensions: 17590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17583
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)