Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p14
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   9.0  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    20   9.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +2

Query: 164 IIVCGKSVNEARTFLDLCDLYEYS--CEYSMV 253
           IIV G         LD+ D Y Y   C+ ++V
Sbjct: 481 IIVKGDVAGSVEALLDIFDTYTYDTICQLNIV 512


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 77  VDCHIVGDKAHLTELKKICEHAYG 148
           +DCH         E+K+ C+   G
Sbjct: 361 LDCHTAHIACKFAEIKEKCDRRTG 384


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 77  VDCHIVGDKAHLTELKKICEHAYG 148
           +DCH         E+K+ C+   G
Sbjct: 72  LDCHTAHIACKFAEIKEKCDRRTG 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,487
Number of Sequences: 438
Number of extensions: 2145
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)