Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p10
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   5.1  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   5.1  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   6.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.8  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 91  TFFLLNLFIWFYSFFFL*LYCNR 23
           TF +   F WF+ FFF   +C R
Sbjct: 68  TFTIEAFFYWFFFFFFFFSHCRR 90


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +3

Query: 240 SVTSSGVS--ENIACGSMTTDEEEID 311
           S +SSG S   +I CGS  T++EE+D
Sbjct: 29  SGSSSGASLLVDIMCGSKETEDEEVD 54


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +1

Query: 574 GTSYRARGHKGKL--CAH 621
           G SY+AR H GKL  CAH
Sbjct: 110 GFSYKAREHTGKLDFCAH 127


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 349 STELTLEVALPTGSISSSSVVMLPQAIFSLTPEDVTENRLSSKLY 215
           + ++TL+  + TG +++   V+    I+     + TEN  S +LY
Sbjct: 48  TNKITLDNPVYTGFLNTQGRVLFDSFIYPKVSNNGTENERSDELY 92


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 339 NSVDP-GQFATKIDQRYGGQYLTPDQLPEFCAQL 437
           N +DP  Q    ++ R GG Y+ P +L    AQL
Sbjct: 74  NELDPKAQIKKLMETRSGGTYIPPAKLKALQAQL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,025
Number of Sequences: 5004
Number of extensions: 42771
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)