Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p07
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    33   0.028
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    33   0.049
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    30   0.34 
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    27   1.8  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    27   2.4  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.4  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   2.4  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   4.2  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   4.2  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   7.4  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   7.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   7.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.7  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = +3

Query: 375 RFKDQFESDQEDQSAIDDET--NELKSNVPQLSSNFKSKTVRFKPLVK--KKDEPSPADL 542
           R + Q ES+QE +S +D+      +++   ++ ++ KS +V  KP  K  K D P+P DL
Sbjct: 410 RRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 469

Query: 543 GPVVNKMLYRSL 578
             +  K   RSL
Sbjct: 470 VNLSEKTSNRSL 481


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = +3

Query: 117 KCVRFCKSSTEIRPGPADHS-LRRDFDLIENNVVCH-AKLPNPAPFNVRADRFKSRKDDG 290
           KC   C    +  P P  H+  + D    ++   CH  K P P P N      K  K + 
Sbjct: 168 KCKEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 227

Query: 291 PCAATYS--PKPISCNFTK 341
            C+  +   P+P+  N TK
Sbjct: 228 HCSCHHDKFPRPVPHNGTK 246



 Score = 28.7 bits (61), Expect = 0.79
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +3

Query: 132 CKSSTEIRPGPADHS-LRRDFDLIENNVVCH-AKLPNPAPFNVRADRFKSRKDDGPCAAT 305
           C    +  P P  H+  + D    ++   CH  K P P P N      K  K +  C   
Sbjct: 258 CSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHG 317

Query: 306 YSPKPISCNFTK 341
             P+P+  N TK
Sbjct: 318 RFPRPVPHNGTK 329



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 201 ENNVVCHA-KLPNPAPFNVRADRFKSRKDDGPCAATYSPKPISCNFTK 341
           E +  CH  K P P P N      K  K +  C     P+PI  N TK
Sbjct: 255 EEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTK 302



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 201 ENNVVCHA-KLPNPAPFNVRADRFKSRKDDGPCAATYS--PKPISCNFTK 341
           E +  CH  K P P P N      K  K +  C+  +   P+P+  N TK
Sbjct: 226 EEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFPRPVPHNGTK 275



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 219 HAKLPNPAPFNVRADRFKSRKDDGPCAATYSPKPISCNFTK 341
           H K   P P NV     K  K +  C     P+P+  N TK
Sbjct: 372 HGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTK 412


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 21/74 (28%), Positives = 39/74 (52%)
 Frame = +3

Query: 369 ASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGP 548
           +S  +++ +S+   +S + DE +E  S +P+ S+  KS  +  K L  +KD  S   L P
Sbjct: 22  SSVVEEEPDSESTIKSRVSDEIDEHDS-IPEQSNTEKSIEINDKNLEAEKDIESNLSLRP 80

Query: 549 VVNKMLYRSLPLQQ 590
             + +  RS+  +Q
Sbjct: 81  PEDDLDSRSIESEQ 94


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 119 LTKCYILFSRFNFFWIIISWSWPPFNYISFL 27
           L  C  L+   N  W+ +S + PPF  +S L
Sbjct: 158 LLDCLCLYGYANIVWLPVSLATPPFGLLSTL 188


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 287 IIFSGLKSISPNIERSWVWKFCMTNNIIFNQVKISTQRV 171
           I  SGL+ + PNIE   +WK    +    +Q  IS Q V
Sbjct: 274 IWLSGLRIVDPNIESISLWKRIQVSTSPKHQRYISLQEV 312


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 366 SASRFKDQFESDQEDQSAIDDETNELK 446
           SAS  +++ E ++E+++  DDET E K
Sbjct: 308 SASEEEEEEEEEEEEENEADDETRENK 334


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 435 NELKSNVPQLSSNFKSKTVRFKPLVKKK 518
           N +K+NVPQ SS++     + +PL +K+
Sbjct: 491 NTVKANVPQSSSSYTDNNKQKEPLEEKR 518


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 357 FGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKS 482
           + S    F+D FE++Q D   ++  T   K N+ QL    K+
Sbjct: 60  YQSLFEEFQDCFENEQLDVEWVESVTFHRKQNLEQLRRELKA 101


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +1

Query: 220 MQNFQTQLLSMLGLIDLSPEKMMALVQPLILQNQFRVILQNAQLCHLVPLQADSKINLKV 399
           +QN  +Q    +G I  S  K+     PL L+NQ+   L NAQ+ + + + A  ++ +  
Sbjct: 399 IQNRMSQSFFSVGYIAKSTFKL----NPLRLRNQYIYFLTNAQVINYITILAVPQL-ISY 453

Query: 400 IKK 408
           +KK
Sbjct: 454 VKK 456


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 353 HSCAFCKITRNWFWRISGCTRAIIFSGLKSISPNIERSWVWKFCMTNN 210
           H CAF  +T++    +  C+RA +   +   S  +E      FC  NN
Sbjct: 56  HRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKKF--FCNVNN 101


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 354 PFGSSASRFKDQFESDQEDQ 413
           PFGS  SRF ++  SD E Q
Sbjct: 329 PFGSFVSRFTNRVASDLESQ 348


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 303 TYSPKPISCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETN 437
           T+SP+    + TK TAV    S    +    S+ E+  +  DE++
Sbjct: 513 TFSPEIREPSLTKKTAVSMQESKEEGRSDESSESEESGSSSDESD 557


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +3

Query: 399 DQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGPVVNKMLY--- 569
           D E  SA+D+ TN+   ++P  S ++   T       K+   P    LG V++++++   
Sbjct: 406 DYESISAVDENTNDSNESLPS-SHDYSEST-------KENSAPDSLLLGLVLDELVFSTT 457

Query: 570 RSLPLQQMAPFFSS 611
            + PL  ++  F S
Sbjct: 458 STTPLPALSHLFPS 471


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 203 FNQVKISTQRVICWSRPYFSA*FTKPNTLTKCYIL 99
           F+  K +T+ V   + P FS  FTKPNT  K  +L
Sbjct: 706 FSFAKPNTENVTT-TAPQFSFNFTKPNTDAKTNLL 739


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 GSSASRFKDQFESDQEDQSAIDDETN 437
           G  ASR K Q+ESD  +  A + +T+
Sbjct: 363 GQRASREKRQYESDASESEAEESKTS 388


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 68  ISWSWPPFNYISFLNHFDK 12
           ++W WP F Y  F+  F++
Sbjct: 174 VNWWWPTFVYNDFMYEFER 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,484
Number of Sequences: 5004
Number of extensions: 61280
Number of successful extensions: 237
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)