Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13p07
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 31 1.1
11_01_0261 - 1989988-1990090,1990232-1990368,1990483-1990589,199... 30 1.4
03_05_1057 - 30005946-30006088,30006183-30006243,30006493-300065... 30 1.9
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 29 2.5
06_03_0950 - 26266755-26266917,26267273-26267652,26267742-262679... 29 4.4
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 29 4.4
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 28 5.8
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435... 28 7.6
09_03_0086 + 12230402-12231526 28 7.6
07_03_1398 - 26271034-26271131,26271314-26271425,26271750-262717... 28 7.6
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 255 RADRFKSRKDDGPCAATYSPKPISCNFTKCTAVPFGSSASRFKDQFESDQEDQSAI--DD 428
R ++ K R+ DG A SP P S + K + G+ D E D ED+ + DD
Sbjct: 35 REEKRKRRELDGVGLAEESPPPGS-SLGKILSTESGAIGLEQSD--EDDMEDEHTVPGDD 91
Query: 429 ETNELKSN 452
ETN++ +N
Sbjct: 92 ETNDMINN 99
>11_01_0261 -
1989988-1990090,1990232-1990368,1990483-1990589,
1990708-1990786,1990952-1991038,1991688-1991966,
1992109-1992822
Length = 501
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 99 QNITFGKCVRFCKSSTEIRPGPADHSLRRDF-DLIENNVVCHAKLPNPAPFNVRADRFKS 275
+ ITF V K I PGP SLRR++ LI+ L N PF K+
Sbjct: 183 KKITFNLTV---KQLVSIEPGPWTESLRREYVKLIDGFFSIPFPLANLLPFTTYGQALKA 239
Query: 276 RK 281
RK
Sbjct: 240 RK 241
>03_05_1057 -
30005946-30006088,30006183-30006243,30006493-30006566,
30006939-30007020,30007097-30007355,30007633-30007682,
30008243-30008275
Length = 233
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 305 SGCTRAIIFSGLKSISPNIERSWVWKFCMTNNIIFNQVKISTQ 177
SG A + LKS + + SW+W C T++ +++ VK TQ
Sbjct: 77 SGFETATVADILKSKGKSADGSWLW--CTTDDSVYDAVKSMTQ 117
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 180 RRDFDLIENNVVCHAKLPNPAPFNVRAD-RFKSRKDDGPCAATYSPKPISCNFTKCTA 350
RRD +L + ++ KL +PA F+ A+ + DG + T P+ + C F +CTA
Sbjct: 207 RRDAEL-KLTLITENKL-HPALFSASAEHKILQSLADGLISVTAKPQDLQCYFFRCTA 262
>06_03_0950 -
26266755-26266917,26267273-26267652,26267742-26267972,
26268247-26268419,26268549-26268693
Length = 363
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 258 ADRFKSRKDDGPCAATYSPKPISCNFTKCTAVPFGSSASRFKDQFESD 401
A+R + + D AAT++P C F A P+G AS K + +D
Sbjct: 65 AERLRLFEADLFDAATFAPAIAGCQFVFLIATPYGLEASNSKYKNTAD 112
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 375 RFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFK 500
R + ++D+ED +ID+ NE+ + ++S + + +RF+
Sbjct: 106 RKRKHMDNDEEDNDSIDERINEMINRFEEISRDRDALKLRFE 147
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 48 GRPGPTDYDPKEIKAGEQNITFGKCVRFCKSSTEIRPG-PADHSLRRDFDLIENNVVC 218
GRP P D E + FG+C+ FCK + G D + ++I N + C
Sbjct: 499 GRPSPVHKD-----IDEDSTMFGECLAFCKKNLFAEEGNEEDELVEVPEEMIMNRINC 551
>11_06_0066 -
19741883-19742263,19743001-19743231,19743378-19743530,
19743667-19743726,19743806-19743874,19744639-19744719,
19744818-19744920,19745392-19745534,19745621-19745683,
19745803-19745870,19745974-19746055,19746147-19746260,
19746362-19746570,19746647-19746818
Length = 642
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 363 SSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADL 542
S+ S DQF + +S + E + +N+ SK V F P+ + + DL
Sbjct: 425 SNTSISPDQFTDSIQFESLKTPTSKERPAEFVASRANY-SKDVEFSPIPENLGTVADEDL 483
Query: 543 GPVVNKMLYRSLPLQQMAPFF 605
+NK L + +M P F
Sbjct: 484 WMQLNKGCVTDLEMLEMTPGF 504
>09_03_0086 + 12230402-12231526
Length = 374
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 333 FTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSS--NFKSKTVRFKPL 506
F+K V GS + +D + ++E + DDE + + P ++ + ++ K L
Sbjct: 239 FSKWLMVLEGSEETPEQDSGDDEEEPEREDDDECSNAPPSAPPANALLLMRCRSAPAKGL 298
Query: 507 VKKKDEPSPADLGPVVN 557
+++ E P +G V+
Sbjct: 299 ARRRTEEPPPPVGEAVH 315
>07_03_1398 -
26271034-26271131,26271314-26271425,26271750-26271793,
26272158-26272485,26272569-26272982
Length = 331
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 381 KDQFESDQEDQSAIDDETNELKSNVPQLSSN 473
++QFE ++E+ +A DD + N P LS N
Sbjct: 224 ENQFEEEEENIAAADDSEEDGLKNEPVLSKN 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,544,164
Number of Sequences: 37544
Number of extensions: 374686
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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