Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p05
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   1.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   5.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   7.1  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    24   9.4  

>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 197 FECLTCITTPLYLVLLVSAICQGFDT*DLIF 105
           F C+TC  +P+YLV+ + +I       D+ F
Sbjct: 472 FSCITCHNSPVYLVIELFSIGPSASVIDIRF 502


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 9   TRWSRCLPRYCQAHILSIYKNFDLRNEYKIK*K-NQILRVKTLAYRRH 149
           T W RCLP+ C  HIL    + D+  E  I  K   + + K  ++ +H
Sbjct: 754 TGW-RCLPKGCDYHILK-ECSLDINFEISILQKATNLTKFKVSSHMKH 799


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 171 AALFSASSVCDMPGF*HVRFDFFILFCTHFLN 76
           AAL S SS+C +P    V F++F      F++
Sbjct: 454 AALGSRSSMCTLPQLFAVAFEYFDFITDSFVS 485


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 208 PDVQIQNENEVPDLPVIADIKEWIQS 285
           P+V+IQ +NE  D P+  +IK+ +++
Sbjct: 664 PEVRIQTDNETSD-PMDVEIKQLLET 688


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 194 ECLTCITTPLYLVLLVSAICQG 129
           ECL CIT P   V  VS++  G
Sbjct: 246 ECLQCITLPTTSVWSVSSLPNG 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,882
Number of Sequences: 5004
Number of extensions: 20149
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)