Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p03
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   5.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   8.8  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   8.8  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 379 NYGIC*YLGNIPQYLCSLLPNLLKSHHEFLKQ 284
           N+  C +  N+  Y CS LP+L K    + +Q
Sbjct: 229 NFVYCDHCSNVYHYDCSPLPSLNKETRNYSQQ 260


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = -3

Query: 504 FDVVIGLFLIYYFSVTLLIYLLFYSNVYTISRI*APNN--------KDAQITASVSISET 349
           F + IGLF  Y  + +   +L     +YT+ R+   N+        K  Q+  ++    T
Sbjct: 258 FFLTIGLFFYYPDNTSTARFLTKKERLYTVDRVRRSNHSGIESKTFKKYQVIEALKDPVT 317

Query: 348 FLNIFVLFC 322
           +L  F +FC
Sbjct: 318 WLFTFHVFC 326


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 325 KENKDIEECFRDTNRCRNL 381
           KENK I E F+ +N+ +NL
Sbjct: 61  KENKKIWEFFKGSNKIKNL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,789
Number of Sequences: 5004
Number of extensions: 32979
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)