Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13p03
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   7.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   7.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 211 FLGYSTNGFSPIEFLLF 161
           +LGYS + F+PI + +F
Sbjct: 312 WLGYSNSAFNPIIYSIF 328


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 379 LGILIIWGLYSTDG 420
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 379 LGILIIWGLYSTDG 420
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = -3

Query: 495 VIGLFLIYYFSVTLLIYLLFYSNVYTISRI*APNNKDAQITAS 367
           + G+ ++Y+F + ++IY   Y+++    R  +  ++D +I  S
Sbjct: 206 LFGMIMMYWFPLVVIIYT--YTSILLEIRRRSKKSEDDKIRRS 246


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 332 TKILRNVSEILTDAVIWAS 388
           T ILR + E+  DA  W S
Sbjct: 324 TSILRYLQELHVDAPTWIS 342


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 346 PQYLCSLLPNLLKSHHEFLKQ*YHN 272
           P+ + SLL N + +++ + K  Y+N
Sbjct: 301 PKIISSLLNNTIHNNNNYKKLQYYN 325


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 346 PQYLCSLLPNLLKSHHEFLKQ*YHN 272
           P+ + SLL N + +++ + K  Y+N
Sbjct: 312 PKIISSLLNNTIHNNNNYKKLQYYN 336


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 346 PQYLCSLLPNLLKSHHEFLKQ*YHN 272
           P+ + SLL N + +++ + K  Y+N
Sbjct: 312 PKIISSLLNNTIHNNNNYKKLQYYN 336


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 346 PQYLCSLLPNLLKSHHEFLKQ*YHN 272
           P+ + SLL N + +++ + K  Y+N
Sbjct: 301 PKIISSLLNNTIHNNNNYKKLQYYN 325


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 490 WFIFNLLLFCYAFNLLIVL 434
           +++FNL+L C   N + +L
Sbjct: 215 FYVFNLILPCILINSVALL 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,012
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)